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DESCRIPTION
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DESCRIPTION
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Package: clonalityParsers
Type: Package
Title: R package for parsing SNV and CNV calls for clonality analysis
Version: 0.0.0.9000
Author: Pawel Kus
Maintainer: Pawel Kus <pawel.s.kus@protonmail.com>
Description: Clonality analysis requires providing SNV and CNV calls to the
clonality analysis algorithm. Since there is a number of CNV and SNV callers
and at least the same number of clonality analysis alorithms, there might be
tens of parsing combinations required. This package is a container for
functions parsing SNVs and CNVs to a kind of *universal* format, and for
functions parsing the *universally* formated data to the format required by
clonality algorithms, to facilitate interchangeability of the algorithms.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Imports:
dplyr,
GenomeInfoDb,
plyranges,
purrr,
readr,
stringr,
tibble,
tidyr,
vcfR
Suggests:
testthat (>= 3.0.0)
Config/testthat/edition: 3
RoxygenNote: 7.2.1
Depends:
R (>= 2.10)