bug in adding mutations to the recapitated portion of the tree sequence

[mufernando]

We will have a similar issue that pyslim had to deal with because of the time in the metadata from SLiM tree sequences.

stdpopsim/stdpopsim/slim_engine.py

Line 1813 in 5f319a5

start_time = metadata["SLiM"]["tick"]

See tskit-dev/pyslim#308 (comment) and tskit-dev/pyslim#311 for the fix

[nspope]

Gosh, thanks for noticing-- in this case, it's affecting the mutations and not the genealogies, right?

[mufernando]

I don't think it does and @petrelharp agrees. He found this bug btw!

[petrelharp]

And hence very minor - it just results in no mutations for 1 or 2 generations, I think.

[andrewkern]

@mufernando or @petrelharp will one of you submit a patch?