Normal Mode Wizard (NMWiz) is a Chimera plugin designed for visual analysis of normal mode data. Modes may come from principal component, essential dynamics, normal mode analysis or may be any vector describing a molecular motion.
NMWiz can be used for:
- performing ANM, GNM, and PCA/EDA calculations via ProDy
- drawing customizable normal mode arrows
- making animations and sampling conformations
- making interactive square-fluctuations and cross-correlations plots
- comparing pairs of structures and drawing deformation vectors
NMWiz - Chimera can be downloaded from prody.csb.pitt.edu
See NMWiz homepage for documentation and tutorials.
If you have used NMWiz in published work, please consider citing:
Bakan A, Meireles LM, Bahar I. ProDy: Protein Dynamics Inferred from Theory and Experiments. 2011 Bioinformatics 27(11):1575-1577