From 4fbe1d0ac3fc7b30b446d671561d873fe74357bd Mon Sep 17 00:00:00 2001
From: hkir-dev <huseyin_kir@yahoo.com>
Date: Fri, 25 Mar 2022 14:51:18 +0000
Subject: [PATCH] Tests completed and javadocs updated

---
 .../editor/owl/ui/renderer/DOILinkExtractor.java      |  5 ++---
 .../editor/owl/ui/renderer/OMIMLinkExtractor.java     |  5 ++---
 .../editor/owl/ui/renderer/OMIMPSLinkExtractor.java   |  5 ++---
 .../editor/owl/ui/renderer/ORCIDLinkExtractor.java    |  5 ++---
 .../editor/owl/ui/renderer/OrphanetLinkExtractor.java |  5 ++---
 .../ui/renderer/WikipediaVersionedLinkExtractor.java  |  5 ++---
 .../owl/ui/renderer/DOILinkExtractor_TestCase.java    |  5 ++---
 .../owl/ui/renderer/OMIMLinkExtractor_TestCase.java   |  5 ++---
 .../owl/ui/renderer/OMIMPSLinkExtractor_TestCase.java |  5 ++---
 .../owl/ui/renderer/ORCIDLinkExtractor_TestCase.java  | 11 +++++------
 .../ui/renderer/OrphanetLinkExtractor_TestCase.java   |  5 ++---
 .../WikipediaVersionedLinkExtractor_TestCase.java     |  5 ++---
 12 files changed, 27 insertions(+), 39 deletions(-)

diff --git a/protege-editor-owl/src/main/java/org/protege/editor/owl/ui/renderer/DOILinkExtractor.java b/protege-editor-owl/src/main/java/org/protege/editor/owl/ui/renderer/DOILinkExtractor.java
index e8524de38..7feb5acb2 100644
--- a/protege-editor-owl/src/main/java/org/protege/editor/owl/ui/renderer/DOILinkExtractor.java
+++ b/protege-editor-owl/src/main/java/org/protege/editor/owl/ui/renderer/DOILinkExtractor.java
@@ -3,9 +3,8 @@
 import java.util.regex.Pattern;
 
 /**
- * Matthew Horridge
- * Stanford Center for Biomedical Informatics Research
- * 18 Aug 16
+ * A RegEx based link extractor for the 'DOI:' prefix. 
+ * 25 Mar 2022
  */
 public class DOILinkExtractor {
 
diff --git a/protege-editor-owl/src/main/java/org/protege/editor/owl/ui/renderer/OMIMLinkExtractor.java b/protege-editor-owl/src/main/java/org/protege/editor/owl/ui/renderer/OMIMLinkExtractor.java
index fff6de353..d512c9568 100644
--- a/protege-editor-owl/src/main/java/org/protege/editor/owl/ui/renderer/OMIMLinkExtractor.java
+++ b/protege-editor-owl/src/main/java/org/protege/editor/owl/ui/renderer/OMIMLinkExtractor.java
@@ -3,9 +3,8 @@
 import java.util.regex.Pattern;
 
 /**
- * Matthew Horridge
- * Stanford Center for Biomedical Informatics Research
- * 18 Aug 16
+ * A RegEx based link extractor for the 'OMIM:' prefix. 
+ * 25 Mar 2022
  */
 public class OMIMLinkExtractor {
 
diff --git a/protege-editor-owl/src/main/java/org/protege/editor/owl/ui/renderer/OMIMPSLinkExtractor.java b/protege-editor-owl/src/main/java/org/protege/editor/owl/ui/renderer/OMIMPSLinkExtractor.java
index 6e48d0f5e..cf785c1ab 100644
--- a/protege-editor-owl/src/main/java/org/protege/editor/owl/ui/renderer/OMIMPSLinkExtractor.java
+++ b/protege-editor-owl/src/main/java/org/protege/editor/owl/ui/renderer/OMIMPSLinkExtractor.java
@@ -3,9 +3,8 @@
 import java.util.regex.Pattern;
 
 /**
- * Matthew Horridge
- * Stanford Center for Biomedical Informatics Research
- * 18 Aug 16
+ * A RegEx based link extractor for the 'OMIMPS:' prefix. 
+ * 25 Mar 2022
  */
 public class OMIMPSLinkExtractor {
 
diff --git a/protege-editor-owl/src/main/java/org/protege/editor/owl/ui/renderer/ORCIDLinkExtractor.java b/protege-editor-owl/src/main/java/org/protege/editor/owl/ui/renderer/ORCIDLinkExtractor.java
index 960f2f40a..9b2f1bc7a 100644
--- a/protege-editor-owl/src/main/java/org/protege/editor/owl/ui/renderer/ORCIDLinkExtractor.java
+++ b/protege-editor-owl/src/main/java/org/protege/editor/owl/ui/renderer/ORCIDLinkExtractor.java
@@ -3,9 +3,8 @@
 import java.util.regex.Pattern;
 
 /**
- * Matthew Horridge
- * Stanford Center for Biomedical Informatics Research
- * 18 Aug 16
+ * A RegEx based link extractor for the 'ORCID:' prefix. 
+ * 25 Mar 2022
  */
 public class ORCIDLinkExtractor {
 
diff --git a/protege-editor-owl/src/main/java/org/protege/editor/owl/ui/renderer/OrphanetLinkExtractor.java b/protege-editor-owl/src/main/java/org/protege/editor/owl/ui/renderer/OrphanetLinkExtractor.java
index fb5bfa920..3436b3b17 100644
--- a/protege-editor-owl/src/main/java/org/protege/editor/owl/ui/renderer/OrphanetLinkExtractor.java
+++ b/protege-editor-owl/src/main/java/org/protege/editor/owl/ui/renderer/OrphanetLinkExtractor.java
@@ -3,9 +3,8 @@
 import java.util.regex.Pattern;
 
 /**
- * Matthew Horridge
- * Stanford Center for Biomedical Informatics Research
- * 18 Aug 16
+ * A RegEx based link extractor for the 'Orphanet:' prefix. 
+ * 25 Mar 2022
  */
 public class OrphanetLinkExtractor {
 
diff --git a/protege-editor-owl/src/main/java/org/protege/editor/owl/ui/renderer/WikipediaVersionedLinkExtractor.java b/protege-editor-owl/src/main/java/org/protege/editor/owl/ui/renderer/WikipediaVersionedLinkExtractor.java
index 9c7b26c12..88cb3e520 100644
--- a/protege-editor-owl/src/main/java/org/protege/editor/owl/ui/renderer/WikipediaVersionedLinkExtractor.java
+++ b/protege-editor-owl/src/main/java/org/protege/editor/owl/ui/renderer/WikipediaVersionedLinkExtractor.java
@@ -3,9 +3,8 @@
 import java.util.regex.Pattern;
 
 /**
- * Matthew Horridge
- * Stanford Center for Biomedical Informatics Research
- * 18 Aug 16
+ * A RegEx based link extractor for the 'WikipediaVersioned:' prefix. 
+ * 25 Mar 2022
  */
 public class WikipediaVersionedLinkExtractor {
 
diff --git a/protege-editor-owl/src/test/java/org/protege/editor/owl/ui/renderer/DOILinkExtractor_TestCase.java b/protege-editor-owl/src/test/java/org/protege/editor/owl/ui/renderer/DOILinkExtractor_TestCase.java
index cf0c55b75..ea81e87a3 100644
--- a/protege-editor-owl/src/test/java/org/protege/editor/owl/ui/renderer/DOILinkExtractor_TestCase.java
+++ b/protege-editor-owl/src/test/java/org/protege/editor/owl/ui/renderer/DOILinkExtractor_TestCase.java
@@ -9,9 +9,8 @@
 import static org.hamcrest.core.Is.is;
 
 /**
- * Matthew Horridge
- * Stanford Center for Biomedical Informatics Research
- * 18 Aug 16
+ * Unit tests for the DOI link extraction.
+ * 25 Mar 2022
  */
 public class DOILinkExtractor_TestCase {
 
diff --git a/protege-editor-owl/src/test/java/org/protege/editor/owl/ui/renderer/OMIMLinkExtractor_TestCase.java b/protege-editor-owl/src/test/java/org/protege/editor/owl/ui/renderer/OMIMLinkExtractor_TestCase.java
index ed86cf73c..e1b7d4d19 100644
--- a/protege-editor-owl/src/test/java/org/protege/editor/owl/ui/renderer/OMIMLinkExtractor_TestCase.java
+++ b/protege-editor-owl/src/test/java/org/protege/editor/owl/ui/renderer/OMIMLinkExtractor_TestCase.java
@@ -9,9 +9,8 @@
 import static org.hamcrest.core.Is.is;
 
 /**
- * Matthew Horridge
- * Stanford Center for Biomedical Informatics Research
- * 18 Aug 16
+ * Unit tests for the OMIM link extraction.
+ * 25 Mar 2022
  */
 public class OMIMLinkExtractor_TestCase {
 
diff --git a/protege-editor-owl/src/test/java/org/protege/editor/owl/ui/renderer/OMIMPSLinkExtractor_TestCase.java b/protege-editor-owl/src/test/java/org/protege/editor/owl/ui/renderer/OMIMPSLinkExtractor_TestCase.java
index c1226d37c..eee55c880 100644
--- a/protege-editor-owl/src/test/java/org/protege/editor/owl/ui/renderer/OMIMPSLinkExtractor_TestCase.java
+++ b/protege-editor-owl/src/test/java/org/protege/editor/owl/ui/renderer/OMIMPSLinkExtractor_TestCase.java
@@ -9,9 +9,8 @@
 import static org.hamcrest.core.Is.is;
 
 /**
- * Matthew Horridge
- * Stanford Center for Biomedical Informatics Research
- * 18 Aug 16
+ * Unit tests for the OMIMPS link extraction.
+ * 25 Mar 2022
  */
 public class OMIMPSLinkExtractor_TestCase {
 
diff --git a/protege-editor-owl/src/test/java/org/protege/editor/owl/ui/renderer/ORCIDLinkExtractor_TestCase.java b/protege-editor-owl/src/test/java/org/protege/editor/owl/ui/renderer/ORCIDLinkExtractor_TestCase.java
index 076d963dd..ad53d3fac 100644
--- a/protege-editor-owl/src/test/java/org/protege/editor/owl/ui/renderer/ORCIDLinkExtractor_TestCase.java
+++ b/protege-editor-owl/src/test/java/org/protege/editor/owl/ui/renderer/ORCIDLinkExtractor_TestCase.java
@@ -9,9 +9,8 @@
 import static org.hamcrest.core.Is.is;
 
 /**
- * Matthew Horridge
- * Stanford Center for Biomedical Informatics Research
- * 18 Aug 16
+ * Unit tests for the ORCID link extraction.
+ * 25 Mar 2022
  */
 public class ORCIDLinkExtractor_TestCase {
 
@@ -33,14 +32,14 @@ public void shouldExtractId() {
     public void shouldIgnoreCase_AllLowerCase() {
         String id = "orcid:0000-0001-7258-9596";
         Optional<String> extractedId = extractor.extractLinkLiteral(id);
-        assertThat(extractedId, is(Optional.of(DOILinkExtractor.DOI_URL_BASE + "0000-0001-7258-9596")));
+        assertThat(extractedId, is(Optional.of(ORCIDLinkExtractor.ORCID_URL_BASE + "0000-0001-7258-9596")));
     }
 
     @Test
     public void shouldIgnoreCase_MixedCase() {
         String id = "Orcid:0000-0001-7258-9596";
         Optional<String> extractedId = extractor.extractLinkLiteral(id);
-        assertThat(extractedId, is(Optional.of(DOILinkExtractor.DOI_URL_BASE + "0000-0001-7258-9596")));
+        assertThat(extractedId, is(Optional.of(ORCIDLinkExtractor.ORCID_URL_BASE + "0000-0001-7258-9596")));
     }
 
     @Test
@@ -54,7 +53,7 @@ public void shouldNotExtractIdInCaseOfMissingPrefix() {
     public void shouldAllowWhiteSpaceAfterPrefix() {
         String id = "orcid: 0000-0001-7258-9596";
         Optional<String> extractedId = extractor.extractLinkLiteral(id);
-        assertThat(extractedId, is(Optional.of(DOILinkExtractor.DOI_URL_BASE + "0000-0001-7258-9596")));
+        assertThat(extractedId, is(Optional.of(ORCIDLinkExtractor.ORCID_URL_BASE + "0000-0001-7258-9596")));
     }
 
     @Test
diff --git a/protege-editor-owl/src/test/java/org/protege/editor/owl/ui/renderer/OrphanetLinkExtractor_TestCase.java b/protege-editor-owl/src/test/java/org/protege/editor/owl/ui/renderer/OrphanetLinkExtractor_TestCase.java
index 3e57ef447..63ca7e6e1 100644
--- a/protege-editor-owl/src/test/java/org/protege/editor/owl/ui/renderer/OrphanetLinkExtractor_TestCase.java
+++ b/protege-editor-owl/src/test/java/org/protege/editor/owl/ui/renderer/OrphanetLinkExtractor_TestCase.java
@@ -9,9 +9,8 @@
 import static org.hamcrest.core.Is.is;
 
 /**
- * Matthew Horridge
- * Stanford Center for Biomedical Informatics Research
- * 18 Aug 16
+ * Unit tests for the orphanet link extraction.
+ * 25 Mar 2022
  */
 public class OrphanetLinkExtractor_TestCase {
 
diff --git a/protege-editor-owl/src/test/java/org/protege/editor/owl/ui/renderer/WikipediaVersionedLinkExtractor_TestCase.java b/protege-editor-owl/src/test/java/org/protege/editor/owl/ui/renderer/WikipediaVersionedLinkExtractor_TestCase.java
index 0a92a2b62..1574a2c39 100644
--- a/protege-editor-owl/src/test/java/org/protege/editor/owl/ui/renderer/WikipediaVersionedLinkExtractor_TestCase.java
+++ b/protege-editor-owl/src/test/java/org/protege/editor/owl/ui/renderer/WikipediaVersionedLinkExtractor_TestCase.java
@@ -9,9 +9,8 @@
 import static org.hamcrest.core.Is.is;
 
 /**
- * Matthew Horridge
- * Stanford Center for Biomedical Informatics Research
- * 18 Aug 16
+ * Unit tests for the WikipediaVersioned link extraction.
+ * 25 Mar 2022
  */
 public class WikipediaVersionedLinkExtractor_TestCase {