C-scan error

[ianikim]

Hi, thanks a lot for the wonderful software!
I used C-scan to find E-P contests,but I encountered an error ：Error in if (n > 0) c(NA_integer_, -n) else integer() : missing value where TRUE/FALSE needed
The lines :anch <- anchors_CSCAn(WT_10kb_hic$IDX, attr(WT_10kb_hic, "resolution"), bedlist = list(bed,bed)) cscan <- CSCAn(list(WT_10kb_hic), anchors = anch)
Could you help me with this? Thank you very much!
ianikim

[teunbrand]

Hi there,
I don't have enough information to reproduce the error, so I don't know how to fix it.
However, from glancing at your code, it seems like you're using the same bed data.frame twice in bedlist = list(bed,bed). This seems more appropriate for PESCAn instead of CSCAn.

[ianikim]

Hi, thanks a lot!
One bed isTSS.bed,another is H3K4me1.bed
ianikim