diff --git a/src/transform.js b/src/transform.js
index 847da88..2040bc3 100644
--- a/src/transform.js
+++ b/src/transform.js
@@ -69,7 +69,6 @@ export default function transform ( code, id, isEntry, ignoreGlobal, customNamed
 	const HELPERS_NAME = deconflict( scope, globals, 'commonjsHelpers' ); // TODO technically wrong since globals isn't populated yet, but ¯\_(ツ)_/¯
 
 	const namedExports = {};
-	if ( customNamedExports ) customNamedExports.forEach( name => namedExports[ name ] = true );
 
 	// TODO handle transpiled modules
 	let shouldWrap = /__esModule/.test( code );
@@ -224,28 +223,32 @@ export default function transform ( code, id, isEntry, ignoreGlobal, customNamed
 		namedExportDeclarations.push( exportModuleExports );
 	}
 
+	const name = getName( id );
+
+	function addExport ( x ) {
+		let declaration;
+
+		if ( x === name ) {
+			const deconflicted = deconflict( scope, globals, name );
+			declaration = `var ${deconflicted} = ${moduleName}.${x};\nexport { ${deconflicted} as ${x} };`;
+		} else {
+			declaration = `export var ${x} = ${moduleName}.${x};`;
+		}
+
+		namedExportDeclarations.push( declaration );
+	}
+
+	if ( customNamedExports ) customNamedExports.forEach( addExport );
+
 	if ( shouldWrap ) {
 		const args = `module${uses.exports ? ', exports' : ''}`;
 
-		const name = getName( id );
-
 		wrapperStart = `var ${moduleName} = ${HELPERS_NAME}.createCommonjsModule(function (${args}) {\n`;
 		wrapperEnd = `\n});`;
 
 		Object.keys( namedExports )
 			.filter( key => !blacklistedExports[ key ] )
-			.forEach( x => {
-				let declaration;
-
-				if ( x === name ) {
-					const deconflicted = deconflict( scope, globals, name );
-					declaration = `var ${deconflicted} = ${moduleName}.${x};\nexport { ${deconflicted} as ${x} };`;
-				} else {
-					declaration = `export var ${x} = ${moduleName}.${x};`;
-				}
-
-				namedExportDeclarations.push( declaration );
-			});
+			.forEach( addExport );
 	} else {
 		let hasDefaultExport = false;
 		const names = [];
diff --git a/test/function/reexports/_config.js b/test/function/reexports/_config.js
new file mode 100644
index 0000000..64301d6
--- /dev/null
+++ b/test/function/reexports/_config.js
@@ -0,0 +1,9 @@
+const path = require( 'path' );
+
+module.exports = {
+	pluginOptions: {
+		namedExports: {
+			[ path.resolve( __dirname, 'foo.js' ) ]: [ 'named' ]
+		}
+	}
+};
diff --git a/test/function/reexports/bar.js b/test/function/reexports/bar.js
new file mode 100644
index 0000000..cbf3e94
--- /dev/null
+++ b/test/function/reexports/bar.js
@@ -0,0 +1 @@
+exports.named = 42;
diff --git a/test/function/reexports/foo.js b/test/function/reexports/foo.js
new file mode 100644
index 0000000..5cc5445
--- /dev/null
+++ b/test/function/reexports/foo.js
@@ -0,0 +1 @@
+module.exports = require( './bar.js' );
diff --git a/test/function/reexports/main.js b/test/function/reexports/main.js
new file mode 100644
index 0000000..5805d48
--- /dev/null
+++ b/test/function/reexports/main.js
@@ -0,0 +1,3 @@
+import { named } from './foo.js';
+
+assert.equal( named, 42 );
diff --git a/test/test.js b/test/test.js
index 3382c77..253deb2 100644
--- a/test/test.js
+++ b/test/test.js
@@ -89,7 +89,7 @@ describe( 'rollup-plugin-commonjs', () => {
 			( config.solo ? it.only : it )( dir, () => {
 				return rollup({
 					entry: `function/${dir}/main.js`,
-					plugins: [ commonjs() ]
+					plugins: [ commonjs( config.pluginOptions ) ]
 				}).then( bundle => {
 					const { code } = bundle.generate({ format: 'cjs' });
 					if ( config.show || config.solo ) {