{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":645412021,"defaultBranch":"main","name":"Telometer","ownerLogin":"santiago-es","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2023-05-25T15:35:42.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/10642529?v=4","public":true,"private":false,"isOrgOwned":false},"refInfo":{"name":"","listCacheKey":"v0:1725497413.0","currentOid":""},"activityList":{"items":[{"before":"14fde5ea5f9022bc771ed4c9d9a0d57c3e196926","after":"4bfd809e17b042520dc095f0d66109669b13feb6","ref":"refs/heads/main","pushedAt":"2024-09-09T20:16:25.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"santiago-es","name":null,"path":"/santiago-es","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10642529?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"bed5b86e98ae1d91c84dd7b11cb3666520fd5aa3","after":"14fde5ea5f9022bc771ed4c9d9a0d57c3e196926","ref":"refs/heads/main","pushedAt":"2024-09-05T01:06:07.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"santiago-es","name":null,"path":"/santiago-es","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10642529?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"fbe9e6b08738c55b6a79de00bab07c4d1dba1adc","after":"bed5b86e98ae1d91c84dd7b11cb3666520fd5aa3","ref":"refs/heads/main","pushedAt":"2024-09-05T00:59:27.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"santiago-es","name":null,"path":"/santiago-es","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10642529?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"1f736d184e37d48aa809dfb998ab972bed010832","after":"fbe9e6b08738c55b6a79de00bab07c4d1dba1adc","ref":"refs/heads/main","pushedAt":"2024-09-05T00:58:45.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"santiago-es","name":null,"path":"/santiago-es","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10642529?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"0b13d88c9be4fe42901ea10e57229d2de80ec1b0","after":"1f736d184e37d48aa809dfb998ab972bed010832","ref":"refs/heads/main","pushedAt":"2024-09-05T00:55:03.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"santiago-es","name":null,"path":"/santiago-es","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10642529?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"a29585e283890589799c67e9fcc26f834a728f58","after":"0b13d88c9be4fe42901ea10e57229d2de80ec1b0","ref":"refs/heads/main","pushedAt":"2024-09-05T00:53:44.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"santiago-es","name":null,"path":"/santiago-es","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10642529?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"effacb771166699d3408cc6c740ef9ffe71990eb","after":"a29585e283890589799c67e9fcc26f834a728f58","ref":"refs/heads/main","pushedAt":"2024-09-05T00:46:55.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"santiago-es","name":null,"path":"/santiago-es","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10642529?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"71311a15ee72c4b8357b87dce23d43b5d9939c1a","after":"effacb771166699d3408cc6c740ef9ffe71990eb","ref":"refs/heads/main","pushedAt":"2024-08-22T21:32:01.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"santiago-es","name":null,"path":"/santiago-es","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10642529?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"5b668b760f72eed95fd79feebebd8f7b048b7846","after":"71311a15ee72c4b8357b87dce23d43b5d9939c1a","ref":"refs/heads/main","pushedAt":"2024-08-22T21:31:46.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"santiago-es","name":null,"path":"/santiago-es","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10642529?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"24052fe83564e2f7a5cff537cc4c50bd4b18260a","after":"5b668b760f72eed95fd79feebebd8f7b048b7846","ref":"refs/heads/main","pushedAt":"2024-08-22T21:29:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"santiago-es","name":null,"path":"/santiago-es","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10642529?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"d7a1d4c973a937741cb07c836f77e38dcb6dffd4","after":"24052fe83564e2f7a5cff537cc4c50bd4b18260a","ref":"refs/heads/main","pushedAt":"2024-08-22T21:28:48.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"santiago-es","name":null,"path":"/santiago-es","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10642529?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"b487f5cd6e258621ad25f85e305ba19bb83f398b","after":"d7a1d4c973a937741cb07c836f77e38dcb6dffd4","ref":"refs/heads/main","pushedAt":"2024-08-22T21:24:48.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"santiago-es","name":null,"path":"/santiago-es","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10642529?s=80&v=4"},"commit":{"message":"Updated to version 0.95\n\nMade many improvements to source code\r\n\r\n1. Improved handling of rare telomeres with non-exact matches to canonical telomere sequence within bona fide telomere sequence. Previous versions did not count these gaps as telomere, current version does.\r\n\r\n2. Improved sub/telomere boundary identification by incorporating a scanning window which calculates the telomere density along the read and ensures that sub/telomere boundaries are not prematurely called when there is a \"gap\" consisting of 1 basepair mismatched telomeric sequence at the subtelomeric boundary. The maximum tolerated gap can be altered by the user with the -g flag (default 100 bp). \r\n\r\n3. Deprecated support for R9, only recommend R10 sequencing for telomere measurement from now on as this is the chemistry ONT will continue to support and produces better data anyhow.\r\n\r\n4. Relatedly, common telomere miscalling errors identified from R9 chemistry reads are no longer counted as telomeric motifs, only TTAGGG and CCCTAA are (+/- 1 basepair mismatch)","shortMessageHtmlLink":"Updated to version 0.95"}},{"before":"6018871c1bf11e3c9939e44ecc317bf4632feeb3","after":"b487f5cd6e258621ad25f85e305ba19bb83f398b","ref":"refs/heads/main","pushedAt":"2024-06-03T16:42:50.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"santiago-es","name":null,"path":"/santiago-es","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10642529?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"407b4d61ada765610de2c511e223111a26002105","after":"6018871c1bf11e3c9939e44ecc317bf4632feeb3","ref":"refs/heads/main","pushedAt":"2024-06-03T01:43:27.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"santiago-es","name":null,"path":"/santiago-es","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10642529?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"68fa93c6b1877bb7f5f22999786aa64873eefd34","after":"407b4d61ada765610de2c511e223111a26002105","ref":"refs/heads/main","pushedAt":"2024-06-02T07:29:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"santiago-es","name":null,"path":"/santiago-es","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10642529?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"3714f3d60195889cea84e3a8aa2950fddcb0b351","after":"68fa93c6b1877bb7f5f22999786aa64873eefd34","ref":"refs/heads/main","pushedAt":"2024-06-02T07:28:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"santiago-es","name":null,"path":"/santiago-es","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10642529?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"847b652c9893764972e307af24a0ddff829c21ca","after":"3714f3d60195889cea84e3a8aa2950fddcb0b351","ref":"refs/heads/main","pushedAt":"2024-05-24T05:24:44.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"santiago-es","name":null,"path":"/santiago-es","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10642529?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"2850c27d7b4b63b652b199ecd5aab22fa03de475","after":"847b652c9893764972e307af24a0ddff829c21ca","ref":"refs/heads/main","pushedAt":"2024-05-22T23:19:56.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"santiago-es","name":null,"path":"/santiago-es","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10642529?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"490fbfae829b4c0ea7397c9f0561df4e536bb93c","after":"2850c27d7b4b63b652b199ecd5aab22fa03de475","ref":"refs/heads/main","pushedAt":"2024-05-22T20:27:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"santiago-es","name":null,"path":"/santiago-es","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10642529?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"b35a11e237088b958eac1b68ab8f2f42c93f9076","after":"490fbfae829b4c0ea7397c9f0561df4e536bb93c","ref":"refs/heads/main","pushedAt":"2024-05-22T20:23:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"santiago-es","name":null,"path":"/santiago-es","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10642529?s=80&v=4"},"commit":{"message":"Add files via upload","shortMessageHtmlLink":"Add files via upload"}},{"before":"270a207ca5b51dee3de1c08f0b20f93c16f1d2d0","after":"b35a11e237088b958eac1b68ab8f2f42c93f9076","ref":"refs/heads/main","pushedAt":"2024-05-22T17:55:42.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"santiago-es","name":null,"path":"/santiago-es","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10642529?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"1a977301a4b283d010495d4a237cc755a9eed015","after":"270a207ca5b51dee3de1c08f0b20f93c16f1d2d0","ref":"refs/heads/main","pushedAt":"2024-05-22T16:14:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"santiago-es","name":null,"path":"/santiago-es","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10642529?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"5c90e8b4a6101cdce33fea6c9be6725c1a118409","after":"1a977301a4b283d010495d4a237cc755a9eed015","ref":"refs/heads/main","pushedAt":"2024-05-22T16:13:58.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"santiago-es","name":null,"path":"/santiago-es","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10642529?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"f3c5ecfd31ce067eeece77ac1f1c35fcca406b7e","after":"5c90e8b4a6101cdce33fea6c9be6725c1a118409","ref":"refs/heads/main","pushedAt":"2024-05-22T16:09:05.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"santiago-es","name":null,"path":"/santiago-es","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10642529?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"accf913da816dedec152d4a10910e85e41117b09","after":"f3c5ecfd31ce067eeece77ac1f1c35fcca406b7e","ref":"refs/heads/main","pushedAt":"2024-05-16T14:05:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"santiago-es","name":null,"path":"/santiago-es","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10642529?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"ed15076e88f713a475c572c31ac74edcdd413b8e","after":"accf913da816dedec152d4a10910e85e41117b09","ref":"refs/heads/main","pushedAt":"2024-05-16T14:03:03.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"santiago-es","name":null,"path":"/santiago-es","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10642529?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"c7ca0e34c67fb0b17ebfabc7004a5db52b870d6b","after":"ed15076e88f713a475c572c31ac74edcdd413b8e","ref":"refs/heads/main","pushedAt":"2024-05-16T13:57:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"santiago-es","name":null,"path":"/santiago-es","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10642529?s=80&v=4"},"commit":{"message":"Add files via upload","shortMessageHtmlLink":"Add files via upload"}},{"before":"c28dae52366a43b472383e5a6766d175effb5d3d","after":"c7ca0e34c67fb0b17ebfabc7004a5db52b870d6b","ref":"refs/heads/main","pushedAt":"2024-05-16T13:54:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"santiago-es","name":null,"path":"/santiago-es","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10642529?s=80&v=4"},"commit":{"message":"adding minimal test dataset\n\nadding minimal test data","shortMessageHtmlLink":"adding minimal test dataset"}},{"before":"0c83b66861904b5a2178c9aabe5c9af1950bf270","after":"c28dae52366a43b472383e5a6766d175effb5d3d","ref":"refs/heads/main","pushedAt":"2024-04-16T23:14:01.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"santiago-es","name":null,"path":"/santiago-es","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10642529?s=80&v=4"},"commit":{"message":"Add files via upload\n\nhg002 diploid genome","shortMessageHtmlLink":"Add files via upload"}},{"before":"1e9207943235effa450b72f61d083fb511d9941e","after":"0c83b66861904b5a2178c9aabe5c9af1950bf270","ref":"refs/heads/main","pushedAt":"2023-12-04T17:18:33.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"santiago-es","name":null,"path":"/santiago-es","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10642529?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEsVKO1gA","startCursor":null,"endCursor":null}},"title":"Activity ยท santiago-es/Telometer"}