diff --git a/.Rbuildignore b/.Rbuildignore index 0d87ab6..0bf50b2 100644 --- a/.Rbuildignore +++ b/.Rbuildignore @@ -5,7 +5,7 @@ ^README\.Rmd$ ^\.travis\.yml$ ^codecov\.yml$ -inst/shiny-examples/rsconnect +inst/shiny-examples/ hex_logo paper rsconnect/ diff --git a/README.Rmd b/README.Rmd index bffc8d7..8100bff 100644 --- a/README.Rmd +++ b/README.Rmd @@ -19,12 +19,14 @@ knitr::opts_chunk$set( [![Travis build status](https://travis-ci.org/santiago1234/optimalcodonR.svg?branch=master)](https://travis-ci.org/santiago1234/optimalcodonR) [![Codecov test coverage](https://codecov.io/gh/santiago1234/optimalcodonR/branch/master/graph/badge.svg)](https://codecov.io/gh/santiago1234/optimalcodonR?branch=master) -[![Lifecycle: maturing](https://img.shields.io/badge/lifecycle-maturing-blue.svg)](https://www.tidyverse.org/lifecycle/#maturing) +[![](https://img.shields.io/badge/lifecycle-stable-brightgreen.svg)](https://www.tidyverse.org/lifecycle/#stable) +This is the R package accompanying our publication: **opticon** + The goal of optimalcodonR is to ... -### [Try our interactive web application!](http://maple:3838/smedina/CodonOptimization/) +### [Try our interactive web application!](https://smedina.shinyapps.io/opticon/) in production [Medina et al 2020](https://www.biorxiv.org/) diff --git a/README.md b/README.md index 6af086a..cafd47d 100644 --- a/README.md +++ b/README.md @@ -9,13 +9,14 @@ status](https://travis-ci.org/santiago1234/optimalcodonR.svg?branch=master)](https://travis-ci.org/santiago1234/optimalcodonR) [![Codecov test coverage](https://codecov.io/gh/santiago1234/optimalcodonR/branch/master/graph/badge.svg)](https://codecov.io/gh/santiago1234/optimalcodonR?branch=master) -[![Lifecycle: -maturing](https://img.shields.io/badge/lifecycle-maturing-blue.svg)](https://www.tidyverse.org/lifecycle/#maturing) +[![](https://img.shields.io/badge/lifecycle-stable-brightgreen.svg)](https://www.tidyverse.org/lifecycle/#stable) +This is the R package accompanying our publication: **opticon** + The goal of optimalcodonR is to … -### [Try our interactive web application\!](http://maple:3838/smedina/CodonOptimization/) +### [Try our interactive web application\!](https://smedina.shinyapps.io/opticon/) in production [Medina et al 2020](https://www.biorxiv.org/) diff --git a/man/figures/README-viz-1.png b/man/figures/README-viz-1.png index b7d0aa8..ef72da1 100644 Binary files a/man/figures/README-viz-1.png and b/man/figures/README-viz-1.png differ diff --git a/man/figures/README-viz2-1.png b/man/figures/README-viz2-1.png index 7504d1c..9807867 100644 Binary files a/man/figures/README-viz2-1.png and b/man/figures/README-viz2-1.png differ