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PAN_ICI_Skin_Kidney_Meta_Params_ImmDeconv.txt
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PAN_ICI_Skin_Kidney_Meta_Params_ImmDeconv.txt
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sample SampleName
Sequencing_Method Description
Analyte Description
Biopsy_Site Feature
Specific_Biopsy_Site Feature
Metastatic_Biopsy Feature
Sample_Treated Feature
Sample_Treatment Feature
Sample_Type Feature
Normal Feature
Primary_Tumor Feature
Read_Length Description
Batch_ID Description
Sequencer Description
Sequencer_ID Description
Sample_Prep Description
FFPE Description
Storage Description
Storage_Method Description
File_Prefix Description
Run_Name Description
Pre_On_Treatment_Match Description
Somatic_Workflow_Match Description
Center Description
Patient_ID Description
TCGA_Study Feature
TCGA_Subtype Description
Cancer_Tissue SampleType
Tissue_Subtype Feature
M_Stage Feature
Metastasized Feature
Clinical_Stage Feature
Response Feature
Responder Feature
Progression Feature
Clinical_Benefit Feature
OS SurvivalID
OS.time SurvivalTime
OS.event NA
PFI SurvivalID
PFI.time SurvivalTime
PFI.event NA
Age Description
Sex Feature
Race Feature
Caucasian Feature
Asian Feature
African Feature
Nat_American Feature
Pac_Islander Feature
Likely_Caucasian Feature
ICI_Rx Feature
aPD1_Rx Feature
aCTLA4_Rx Feature
ICI_Pathway Feature
ICI_Target Feature
Non_ICI_Rx Feature
NeoICI_Rx Feature
ICI_Tx Feature
aPD1_Tx Feature
aCTLA4_Tx Feature
aCTLA4_aPD1_Tx Feature
Non_ICI_Tx Feature
NeoICI_Tx Feature
Prior_Rx Feature
Prior_ICI_Rx Feature
Prior_Tx Feature
Prior_ICI_Tx Feature
Prior_aCTLA4_Tx Feature
Prior_aMAPK_Tx Feature
Subsq_Rx Feature
Subsq_ICI_Rx Feature
Subsq_Tx Feature
Subsq_ICI_Tx Feature
Subsq_aCTLA4_aPD1_Tx Feature
Subsq_aCTLA4_Tx Feature
Subsq_aMAPK_Tx Feature
Patient_Name Description
Dataset Description
IMPRES Description
TIDE_No_Benefits Feature
TIDE_Responder Feature
TIDE Description
TIDE_IFNG Description
TIDE_MSI Description
TIDE_CD274 Description
TIDE_CD8 Description
TIDE_CTL_Flag Feature
TIDE_Dysfunction Description
TIDE_Exclusion Description
TIDE_MDSC Description
TIDE_CAF Description
TIDE_TAM_M2 Description
TIDE_CTL Description
Dataset_Cancer_Tissue Description
Dataset_Cancer_Tissue Description
Choueiri_CCR_2016_Kidney Feature
Gide_Cell_2019_Skin Feature
HugoLo_IPRES_2016_Skin Feature
IMmotion150_Kidney Feature
IMVigor210_Bladder Feature
Kim_NatMed_2018_Stomach Feature
Liu_NatMed_2019_Skin Feature
Miao_Science_2018_Kidney Feature
Prins_GBM_2019_Brain Feature
Riaz_Nivolumab_2017_Skin Feature
VanAllen_antiCTLA4_2015_Skin Feature
Zhao_NatMed_2019_Brain Feature
Feature Description
B_cell_quantiseq_ImmDeconv Feature
Macrophage_M1_quantiseq_ImmDeconv Feature
Macrophage_M2_quantiseq_ImmDeconv Feature
Monocyte_quantiseq_ImmDeconv Feature
Neutrophil_quantiseq_ImmDeconv Feature
NK_cell_quantiseq_ImmDeconv Feature
T_cell_CD4+_(non-regulatory)_quantiseq_ImmDeconv Feature
T_cell_CD8+_quantiseq_ImmDeconv Feature
T_cell_regulatory_(Tregs)_quantiseq_ImmDeconv Feature
Myeloid_dendritic_cell_quantiseq_ImmDeconv Feature
uncharacterized_cell_quantiseq_ImmDeconv Feature
B_cell_naive_cibersort_ImmDeconv Feature
B_cell_memory_cibersort_ImmDeconv Feature
B_cell_plasma_cibersort_ImmDeconv Feature
T_cell_CD8+_cibersort_ImmDeconv Feature
T_cell_CD4+_naive_cibersort_ImmDeconv Feature
T_cell_CD4+_memory_resting_cibersort_ImmDeconv Feature
T_cell_CD4+_memory_activated_cibersort_ImmDeconv Feature
T_cell_follicular_helper_cibersort_ImmDeconv Feature
T_cell_regulatory_(Tregs)_cibersort_ImmDeconv Feature
T_cell_gamma_delta_cibersort_ImmDeconv Feature
NK_cell_resting_cibersort_ImmDeconv Feature
NK_cell_activated_cibersort_ImmDeconv Feature
Monocyte_cibersort_ImmDeconv Feature
Macrophage_M0_cibersort_ImmDeconv Feature
Macrophage_M1_cibersort_ImmDeconv Feature
Macrophage_M2_cibersort_ImmDeconv Feature
Myeloid_dendritic_cell_resting_cibersort_ImmDeconv Feature
Myeloid_dendritic_cell_activated_cibersort_ImmDeconv Feature
Mast_cell_activated_cibersort_ImmDeconv Feature
Mast_cell_resting_cibersort_ImmDeconv Feature
Eosinophil_cibersort_ImmDeconv Feature
Neutrophil_cibersort_ImmDeconv Feature
B_cell_naive_cibersort_abs_ImmDeconv Feature
B_cell_memory_cibersort_abs_ImmDeconv Feature
B_cell_plasma_cibersort_abs_ImmDeconv Feature
T_cell_CD8+_cibersort_abs_ImmDeconv Feature
T_cell_CD4+_naive_cibersort_abs_ImmDeconv Feature
T_cell_CD4+_memory_resting_cibersort_abs_ImmDeconv Feature
T_cell_CD4+_memory_activated_cibersort_abs_ImmDeconv Feature
T_cell_follicular_helper_cibersort_abs_ImmDeconv Feature
T_cell_regulatory_(Tregs)_cibersort_abs_ImmDeconv Feature
T_cell_gamma_delta_cibersort_abs_ImmDeconv Feature
NK_cell_resting_cibersort_abs_ImmDeconv Feature
NK_cell_activated_cibersort_abs_ImmDeconv Feature
Monocyte_cibersort_abs_ImmDeconv Feature
Macrophage_M0_cibersort_abs_ImmDeconv Feature
Macrophage_M1_cibersort_abs_ImmDeconv Feature
Macrophage_M2_cibersort_abs_ImmDeconv Feature
Myeloid_dendritic_cell_resting_cibersort_abs_ImmDeconv Feature
Myeloid_dendritic_cell_activated_cibersort_abs_ImmDeconv Feature
Mast_cell_activated_cibersort_abs_ImmDeconv Feature
Mast_cell_resting_cibersort_abs_ImmDeconv Feature
Eosinophil_cibersort_abs_ImmDeconv Feature
Neutrophil_cibersort_abs_ImmDeconv Feature
T_cell_mcp_counter_ImmDeconv Feature
T_cell_CD8+_mcp_counter_ImmDeconv Feature
cytotoxicity_score_mcp_counter_ImmDeconv Feature
NK_cell_mcp_counter_ImmDeconv Feature
B_cell_mcp_counter_ImmDeconv Feature
Monocyte_mcp_counter_ImmDeconv Feature
Macrophage/Monocyte_mcp_counter_ImmDeconv Feature
Myeloid_dendritic_cell_mcp_counter_ImmDeconv Feature
Neutrophil_mcp_counter_ImmDeconv Feature
Endothelial_cell_mcp_counter_ImmDeconv Feature
Cancer_associated_fibroblast_mcp_counter_ImmDeconv Feature
Myeloid_dendritic_cell_activated_xcell_ImmDeconv Feature
B_cell_xcell_ImmDeconv Feature
T_cell_CD4+_memory_xcell_ImmDeconv Feature
T_cell_CD4+_naive_xcell_ImmDeconv Feature
T_cell_CD4+_(non-regulatory)_xcell_ImmDeconv Feature
T_cell_CD4+_central_memory_xcell_ImmDeconv Feature
T_cell_CD4+_effector_memory_xcell_ImmDeconv Feature
T_cell_CD8+_naive_xcell_ImmDeconv Feature
T_cell_CD8+_xcell_ImmDeconv Feature
T_cell_CD8+_central_memory_xcell_ImmDeconv Feature
T_cell_CD8+_effector_memory_xcell_ImmDeconv Feature
Class-switched_memory_B_cell_xcell_ImmDeconv Feature
Common_lymphoid_progenitor_xcell_ImmDeconv Feature
Common_myeloid_progenitor_xcell_ImmDeconv Feature
Myeloid_dendritic_cell_xcell_ImmDeconv Feature
Endothelial_cell_xcell_ImmDeconv Feature
Eosinophil_xcell_ImmDeconv Feature
Cancer_associated_fibroblast_xcell_ImmDeconv Feature
Granulocyte-monocyte_progenitor_xcell_ImmDeconv Feature
Hematopoietic_stem_cell_xcell_ImmDeconv Feature
Macrophage_xcell_ImmDeconv Feature
Macrophage_M1_xcell_ImmDeconv Feature
Macrophage_M2_xcell_ImmDeconv Feature
Mast_cell_xcell_ImmDeconv Feature
B_cell_memory_xcell_ImmDeconv Feature
Monocyte_xcell_ImmDeconv Feature
B_cell_naive_xcell_ImmDeconv Feature
Neutrophil_xcell_ImmDeconv Feature
NK_cell_xcell_ImmDeconv Feature
T_cell_NK_xcell_ImmDeconv Feature
Plasmacytoid_dendritic_cell_xcell_ImmDeconv Feature
B_cell_plasma_xcell_ImmDeconv Feature
T_cell_gamma_delta_xcell_ImmDeconv Feature
T_cell_CD4+_Th1_xcell_ImmDeconv Feature
T_cell_CD4+_Th2_xcell_ImmDeconv Feature
T_cell_regulatory_(Tregs)_xcell_ImmDeconv Feature
immune_score_xcell_ImmDeconv Feature
stroma_score_xcell_ImmDeconv Feature
microenvironment_score_xcell_ImmDeconv Feature
B_cell_epic_ImmDeconv Feature
Cancer_associated_fibroblast_epic_ImmDeconv Feature
T_cell_CD4+_epic_ImmDeconv Feature
T_cell_CD8+_epic_ImmDeconv Feature
Endothelial_cell_epic_ImmDeconv Feature
Macrophage_epic_ImmDeconv Feature
NK_cell_epic_ImmDeconv Feature
uncharacterized_cell_epic_ImmDeconv Feature
Monocyte_conventional_abis_ImmDeconv Feature
NK_cell_abis_ImmDeconv Feature
T_cell_CD8+_memory_abis_ImmDeconv Feature
T_cell_CD4+_naive_abis_ImmDeconv Feature
T_cell_CD8+_naive_abis_ImmDeconv Feature
B_cell_naive_abis_ImmDeconv Feature
T_cell_CD4+_memory_abis_ImmDeconv Feature
T_cell_MAIT_abis_ImmDeconv Feature
T_cell_gamma_delta_VD2_abis_ImmDeconv Feature
Neutrophil_abis_ImmDeconv Feature
T_cell_gamma_delta_non-VD2_abis_ImmDeconv Feature
Basophil_abis_ImmDeconv Feature
Monocyte_non-conventional_abis_ImmDeconv Feature
B_cell_memory_abis_ImmDeconv Feature
Myeloid_dendritic_cell_abis_ImmDeconv Feature
Plasmacytoid_dendritic_cell_abis_ImmDeconv Feature
B_cell_plasma_immature_abis_ImmDeconv Feature
stroma_score_estimate_ImmDeconv Feature
immune_score_estimate_ImmDeconv Feature
tumor_purity_score_estimate_ImmDeconv Feature
tumor_purity_fraction_estimate_ImmDeconv Feature
B_cell_quantiseq_ImmDeconv_HiLoScore Feature
Macrophage_M1_quantiseq_ImmDeconv_HiLoScore Feature
Macrophage_M2_quantiseq_ImmDeconv_HiLoScore Feature
Monocyte_quantiseq_ImmDeconv_HiLoScore Feature
Neutrophil_quantiseq_ImmDeconv_HiLoScore Feature
NK_cell_quantiseq_ImmDeconv_HiLoScore Feature
T_cell_CD4+_(non-regulatory)_quantiseq_ImmDeconv_HiLoScore Feature
T_cell_CD8+_quantiseq_ImmDeconv_HiLoScore Feature
T_cell_regulatory_(Tregs)_quantiseq_ImmDeconv_HiLoScore Feature
Myeloid_dendritic_cell_quantiseq_ImmDeconv_HiLoScore Feature
uncharacterized_cell_quantiseq_ImmDeconv_HiLoScore Feature
B_cell_naive_cibersort_ImmDeconv_HiLoScore Feature
B_cell_memory_cibersort_ImmDeconv_HiLoScore Feature
B_cell_plasma_cibersort_ImmDeconv_HiLoScore Feature
T_cell_CD8+_cibersort_ImmDeconv_HiLoScore Feature
T_cell_CD4+_naive_cibersort_ImmDeconv_HiLoScore Feature
T_cell_CD4+_memory_resting_cibersort_ImmDeconv_HiLoScore Feature
T_cell_CD4+_memory_activated_cibersort_ImmDeconv_HiLoScore Feature
T_cell_follicular_helper_cibersort_ImmDeconv_HiLoScore Feature
T_cell_regulatory_(Tregs)_cibersort_ImmDeconv_HiLoScore Feature
T_cell_gamma_delta_cibersort_ImmDeconv_HiLoScore Feature
NK_cell_resting_cibersort_ImmDeconv_HiLoScore Feature
NK_cell_activated_cibersort_ImmDeconv_HiLoScore Feature
Monocyte_cibersort_ImmDeconv_HiLoScore Feature
Macrophage_M0_cibersort_ImmDeconv_HiLoScore Feature
Macrophage_M1_cibersort_ImmDeconv_HiLoScore Feature
Macrophage_M2_cibersort_ImmDeconv_HiLoScore Feature
Myeloid_dendritic_cell_resting_cibersort_ImmDeconv_HiLoScore Feature
Myeloid_dendritic_cell_activated_cibersort_ImmDeconv_HiLoScore Feature
Mast_cell_activated_cibersort_ImmDeconv_HiLoScore Feature
Mast_cell_resting_cibersort_ImmDeconv_HiLoScore Feature
Eosinophil_cibersort_ImmDeconv_HiLoScore Feature
Neutrophil_cibersort_ImmDeconv_HiLoScore Feature
B_cell_naive_cibersort_abs_ImmDeconv_HiLoScore Feature
B_cell_memory_cibersort_abs_ImmDeconv_HiLoScore Feature
B_cell_plasma_cibersort_abs_ImmDeconv_HiLoScore Feature
T_cell_CD8+_cibersort_abs_ImmDeconv_HiLoScore Feature
T_cell_CD4+_naive_cibersort_abs_ImmDeconv_HiLoScore Feature
T_cell_CD4+_memory_resting_cibersort_abs_ImmDeconv_HiLoScore Feature
T_cell_CD4+_memory_activated_cibersort_abs_ImmDeconv_HiLoScore Feature
T_cell_follicular_helper_cibersort_abs_ImmDeconv_HiLoScore Feature
T_cell_regulatory_(Tregs)_cibersort_abs_ImmDeconv_HiLoScore Feature
T_cell_gamma_delta_cibersort_abs_ImmDeconv_HiLoScore Feature
NK_cell_resting_cibersort_abs_ImmDeconv_HiLoScore Feature
NK_cell_activated_cibersort_abs_ImmDeconv_HiLoScore Feature
Monocyte_cibersort_abs_ImmDeconv_HiLoScore Feature
Macrophage_M0_cibersort_abs_ImmDeconv_HiLoScore Feature
Macrophage_M1_cibersort_abs_ImmDeconv_HiLoScore Feature
Macrophage_M2_cibersort_abs_ImmDeconv_HiLoScore Feature
Myeloid_dendritic_cell_resting_cibersort_abs_ImmDeconv_HiLoScore Feature
Myeloid_dendritic_cell_activated_cibersort_abs_ImmDeconv_HiLoScore Feature
Mast_cell_activated_cibersort_abs_ImmDeconv_HiLoScore Feature
Mast_cell_resting_cibersort_abs_ImmDeconv_HiLoScore Feature
Eosinophil_cibersort_abs_ImmDeconv_HiLoScore Feature
Neutrophil_cibersort_abs_ImmDeconv_HiLoScore Feature
T_cell_mcp_counter_ImmDeconv_HiLoScore Feature
T_cell_CD8+_mcp_counter_ImmDeconv_HiLoScore Feature
cytotoxicity_score_mcp_counter_ImmDeconv_HiLoScore Feature
NK_cell_mcp_counter_ImmDeconv_HiLoScore Feature
B_cell_mcp_counter_ImmDeconv_HiLoScore Feature
Monocyte_mcp_counter_ImmDeconv_HiLoScore Feature
Macrophage/Monocyte_mcp_counter_ImmDeconv_HiLoScore Feature
Myeloid_dendritic_cell_mcp_counter_ImmDeconv_HiLoScore Feature
Neutrophil_mcp_counter_ImmDeconv_HiLoScore Feature
Endothelial_cell_mcp_counter_ImmDeconv_HiLoScore Feature
Cancer_associated_fibroblast_mcp_counter_ImmDeconv_HiLoScore Feature
Myeloid_dendritic_cell_activated_xcell_ImmDeconv_HiLoScore Feature
B_cell_xcell_ImmDeconv_HiLoScore Feature
T_cell_CD4+_memory_xcell_ImmDeconv_HiLoScore Feature
T_cell_CD4+_naive_xcell_ImmDeconv_HiLoScore Feature
T_cell_CD4+_(non-regulatory)_xcell_ImmDeconv_HiLoScore Feature
T_cell_CD4+_central_memory_xcell_ImmDeconv_HiLoScore Feature
T_cell_CD4+_effector_memory_xcell_ImmDeconv_HiLoScore Feature
T_cell_CD8+_naive_xcell_ImmDeconv_HiLoScore Feature
T_cell_CD8+_xcell_ImmDeconv_HiLoScore Feature
T_cell_CD8+_central_memory_xcell_ImmDeconv_HiLoScore Feature
T_cell_CD8+_effector_memory_xcell_ImmDeconv_HiLoScore Feature
Class-switched_memory_B_cell_xcell_ImmDeconv_HiLoScore Feature
Common_lymphoid_progenitor_xcell_ImmDeconv_HiLoScore Feature
Common_myeloid_progenitor_xcell_ImmDeconv_HiLoScore Feature
Myeloid_dendritic_cell_xcell_ImmDeconv_HiLoScore Feature
Endothelial_cell_xcell_ImmDeconv_HiLoScore Feature
Eosinophil_xcell_ImmDeconv_HiLoScore Feature
Cancer_associated_fibroblast_xcell_ImmDeconv_HiLoScore Feature
Granulocyte-monocyte_progenitor_xcell_ImmDeconv_HiLoScore Feature
Hematopoietic_stem_cell_xcell_ImmDeconv_HiLoScore Feature
Macrophage_xcell_ImmDeconv_HiLoScore Feature
Macrophage_M1_xcell_ImmDeconv_HiLoScore Feature
Macrophage_M2_xcell_ImmDeconv_HiLoScore Feature
Mast_cell_xcell_ImmDeconv_HiLoScore Feature
B_cell_memory_xcell_ImmDeconv_HiLoScore Feature
Monocyte_xcell_ImmDeconv_HiLoScore Feature
B_cell_naive_xcell_ImmDeconv_HiLoScore Feature
Neutrophil_xcell_ImmDeconv_HiLoScore Feature
NK_cell_xcell_ImmDeconv_HiLoScore Feature
T_cell_NK_xcell_ImmDeconv_HiLoScore Feature
Plasmacytoid_dendritic_cell_xcell_ImmDeconv_HiLoScore Feature
B_cell_plasma_xcell_ImmDeconv_HiLoScore Feature
T_cell_gamma_delta_xcell_ImmDeconv_HiLoScore Feature
T_cell_CD4+_Th1_xcell_ImmDeconv_HiLoScore Feature
T_cell_CD4+_Th2_xcell_ImmDeconv_HiLoScore Feature
T_cell_regulatory_(Tregs)_xcell_ImmDeconv_HiLoScore Feature
immune_score_xcell_ImmDeconv_HiLoScore Feature
stroma_score_xcell_ImmDeconv_HiLoScore Feature
microenvironment_score_xcell_ImmDeconv_HiLoScore Feature
B_cell_epic_ImmDeconv_HiLoScore Feature
Cancer_associated_fibroblast_epic_ImmDeconv_HiLoScore Feature
T_cell_CD4+_epic_ImmDeconv_HiLoScore Feature
T_cell_CD8+_epic_ImmDeconv_HiLoScore Feature
Endothelial_cell_epic_ImmDeconv_HiLoScore Feature
Macrophage_epic_ImmDeconv_HiLoScore Feature
NK_cell_epic_ImmDeconv_HiLoScore Feature
uncharacterized_cell_epic_ImmDeconv_HiLoScore Feature
Monocyte_conventional_abis_ImmDeconv_HiLoScore Feature
NK_cell_abis_ImmDeconv_HiLoScore Feature
T_cell_CD8+_memory_abis_ImmDeconv_HiLoScore Feature
T_cell_CD4+_naive_abis_ImmDeconv_HiLoScore Feature
T_cell_CD8+_naive_abis_ImmDeconv_HiLoScore Feature
B_cell_naive_abis_ImmDeconv_HiLoScore Feature
T_cell_CD4+_memory_abis_ImmDeconv_HiLoScore Feature
T_cell_MAIT_abis_ImmDeconv_HiLoScore Feature
T_cell_gamma_delta_VD2_abis_ImmDeconv_HiLoScore Feature
Neutrophil_abis_ImmDeconv_HiLoScore Feature
T_cell_gamma_delta_non-VD2_abis_ImmDeconv_HiLoScore Feature
Basophil_abis_ImmDeconv_HiLoScore Feature
Monocyte_non-conventional_abis_ImmDeconv_HiLoScore Feature
B_cell_memory_abis_ImmDeconv_HiLoScore Feature
Myeloid_dendritic_cell_abis_ImmDeconv_HiLoScore Feature
Plasmacytoid_dendritic_cell_abis_ImmDeconv_HiLoScore Feature
B_cell_plasma_immature_abis_ImmDeconv_HiLoScore Feature
stroma_score_estimate_ImmDeconv_HiLoScore Feature
immune_score_estimate_ImmDeconv_HiLoScore Feature
tumor_purity_score_estimate_ImmDeconv_HiLoScore Feature
tumor_purity_fraction_estimate_ImmDeconv_HiLoScore Feature