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Malloc error when using extra tags in fastq header #70

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lucacozzuto opened this issue Aug 21, 2024 · 2 comments
Open

Malloc error when using extra tags in fastq header #70

lucacozzuto opened this issue Aug 21, 2024 · 2 comments

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@lucacozzuto
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Dear developers,
I got this error when using falco on a single fastq sequence with extra tags in the header. Example:

@794098d5-67f5-4d93-a3a5-a19d3bf4e2d4	MN:i:1119
[running falco|                                                   |  0%]malloc(): invalid size (unsorted)
/nfs/scratch01/bi/mop4/27/f873aa32cd2be99c05869c27783d9e/.command.sh: line 4:    16 Aborted                 (core dumped)

Once I remove the extra tags it goes fine.

Best,
Luca

@andrewdavidsmith
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@lucacozzuto quick question: was the input fastq in gzip format or plain text?

@lucacozzuto
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I tried both

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