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ChangeLog
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2012-06-25 Gavin SALAM <salam@lpthe.jussieu.fr> + Gregory + Matteo
* Release of FastJet fastjet-3.0.3
* NEWS: tidied it up.
* configure.ac:
* include/fastjet/config_win.h:
* Doxyfile:
* tex/fastjet-doc.tex:
changed version to 3.0.3
2012-06-15 Gregory Soyez <soyez@fastjet.fr>
* NEWS:
cleaned the list of things we need to merge from the trunk
* configure.ac:
* include/fastjet/config_win.h:
* Doxyfile:
* tex/fastjet-doc.tex:
changed version to 3.0.3-devel
* Merged the items below from the trunk
2012-06-13 Gavin Salam <salam@lpthe.jussieu.fr> + Matteo & Gregory
* NEWS:
worked on NEWS file for 3.0.3, including a list of the things we
need to merge from the trunk
2012-06-12 Gregory Soyez <soyez@fastjet.fr>
* include/fastjet/NNH.hh:
* plugins/D0RunIICone/ILConeAlgorithm.hpp:
Worked around some issues to allow compilation with gcc 4.7 (and
clang) which no longer performs unqualified template
lookups. See e.g. http://gcc.gnu.org/gcc-4.7/porting_to.html
[Thanks to Gavin Hesketh and Jihun Kim for reporting this]
2012-02-20 Gregory Soyez <soyez@fastjet.fr>
* configure.ac:
fixed bug related to the --extra-warnings flag: it now sets its
own internal variable (ENABLE_EXTRA_WARNINGS_FLAG rather than
overwriting ENABLE_DEBUG_FLAG. Now, enabling/disabling debug info
should work fine again.
2012-02-06 Gregory Soyez <soyez@fastjet.fr>
* configure.ac:
* doc/Makefile.am:
* doc/figs/Makefile.am: *** ADDED ***
added the figures of the manual to the distributed tarball
2012-01-17 Gavin SALAM <salam@lpthe.jussieu.fr> + Matteo & Gregory
* Release of fastjet-3.0.2
2012-01-12 Gregory Soyez <soyez@fastjet.fr>
* fastjet-config.in:
used @libdir@ instead of @prefix@/lib and @includedir@ instead
of @prefix@/include for a correct treatment of non-standard
installation location
2011-12-16 Matteo Cacciari <cacciari@lpthe.jussieu.fr>
* configure.ac:
added test that prevents user from installing in the build
directory (copied from LHAPDF)
2011-12-13 Gregory Soyez <soyez@fastjet.fr>
* plugins/D0RunICone/D0RunIBaseConePlugin.cc:
* plugins/D0RunIICone/D0RunIIConePlugin.cc:
updated banner to give credit to the D0 collaboration
* COPYING:
* plugins/D0RunIICone/ProtoJet.hpp:
* plugins/D0RunIICone/inline_maths.h:
* plugins/D0RunIICone/ILConeAlgorithm.hpp:
* plugins/D0RunIICone/HepEntity.h:
* plugins/D0RunIICone/ConeSplitMerge.hpp:
* plugins/D0RunIICone/ConeJetInfo.hpp:
* plugins/D0RunICone/inline_maths.h:
* plugins/D0RunICone/HepEntityIpre96.h:
* plugins/D0RunICone/HepEntityI.h:
* plugins/D0RunICone/ConeClusterAlgo.hpp:
added license information (Lars Sonnenschein and the D0
collaboration granted us the permission to distribute the D0
codes under the terms of the GPLv2
2011-12-05 Gregory Soyez <soyez@fastjet.fr>
* configure.ac:
fixed an issue in the "g++ presence test" to cover situations
where the full path to the compiler is specified.
2011-12-03 Gavin Salam <salam@lpthe.jussieu.fr>
* ../contrib: *** ADDED ***
* ../contrib/vermilion/* *** ADDED ***
* ../3rd_party_interfaces/ -> ../contrib/3rd_party_interfaces/
set up some structure for our copy of contrib, including the
code from Chris Vermilion + moved our pythia8 interface into
there.
2011-12-02 Gavin SALAM <salam@lpthe.jussieu.fr> + Matteo + Gregory
* RoadMap:
cleaned it up in preparation for transition to 3.1.0-devel
* doc/contrib-policy.txt: *** ADDED ***
added this as a location to start thinking about how the contrib
area will work.
2011-12-02 Gregory Soyez <soyez@fastjet.fr>
* configure.ac:
. added a test for sed
. added an explicit test that the C++ compiler returned by
AC_PROG_CXX (g++ if none found!) really exists (in case g++
is not installed)
2011-12-01 Gavin Salam <salam@lpthe.jussieu.fr>
* src/ClusterSequence.cc:
* include/fastjet/ClusterSequence.hh:
void _print_banner() -> static void print_banner(); i.e. it's
now public and documented in doxygen.
* example/fastjet_timing_plugins.cc:
this now prints a banner early on
* doc/fastjet-doc.tex (section{Error handling}):
added mention of CS::print_banner().
2011-12-01 Gregory Soyez <soyez@fastjet.fr>
* configure.ac:
issued an error message if no C++ compiler is found
2011-11-29 Gavin Salam <salam@lpthe.jussieu.fr>
* CHECKLIST:
updated this to reflect the new scripts/set-version.sh script
* doc/fastjet-doc.tex
added note about comment lines to be removed for automatic
version changes
* scripts/set-version.sh (version): *** ADDED ***
run
./scripts/set-version.sh VERSION-NUMBER
to make all the changes needed to switch to a new
version
* mksnapshot.sh -> scripts/mksnapshot.sh
clean up main directory by having maintenance scripts in the
scripts/ directory.
* tarit.sh -> scripts/old/tarit.sh
* tarit-areas.sh -> scripts/old/tarit-areas.sh
* svntagit.sh -> scripts/old/svntagit.sh
these scripts were out of date in some way of other, so moved
them out of the way
2011-11-28 Gavin SALAM <salam@lpthe.jussieu.fr>
* doc/fastjet-doc.tex:
* Doxyfile (PROJECT_NUMBER):
* include/fastjet/config_win.h (FASTJET_PACKAGE_STRING):
* configure.ac:
version number becomes 3.0.2-devel
* switched SISCone back over to trunk
2011-11-25 Gavin SALAM <salam@lpthe.jussieu.fr> + Matteo & Gregory
Release of FastJet 3.0.1
2011-11-25 Gavin SALAM <salam@lpthe.jussieu.fr> + Matteo & Gregory
* NEWS:
further small changes.
* plugins/TrackJet/TrackJetPlugin.cc (_print_banner):
rephrased the banner to reflect updated authorship info.
2011-11-25 Gregory Soyez <soyez@fastjet.fr>
* plugins/D0RunIICone/D0RunIIConePlugin.cc (_print_banner):
* plugins/PxCone/PxConePlugin.cc (_print_banner):
* plugins/D0RunICone/D0RunIBaseConePlugin.cc (_print_banner):
* plugins/CMSIterativeCone/CMSIterativeConePlugin.cc (_print_banner):
* plugins/CDFCones/CDFJetCluPlugin.cc (_print_banner):
* plugins/CDFCones/CDFMidPointPlugin.cc (_print_banner):
* plugins/ATLASCone/ATLASConePlugin.cc (_print_banner):
removed the mention to a minimal FJ version (vX.Y upwards)
* plugins/SISCone/SISConeSphericalPlugin.cc:
* plugins/SISCone/SISConePlugin.cc:
redirect the SISCone banner to the same stream as the FastJet
banners.
* plugins/ATLASCone/ATLASConePlugin.cc:
fixed a memory leak in the interface to the ATLAS cone plugin
* example/fastjet_timing_plugins.cc:
inverted the ordering of some tests for the default jet alg to
make sure that the -kt command-line option is processed.
2011-11-24 Gregory Soyez <soyez@fastjet.fr>
* plugins/PxCone/PxConePlugin.cc:
disabled the banner since the fortran code already has one
* plugins/D0RunICone/D0RunIBaseConePlugin.cc:
* plugins/D0RunIICone/D0RunIIConePlugin.cc:
* plugins/ATLASCone/ATLASConePlugin.cc:
* plugins/CMSIterativeCone/CMSIterativeConePlugin.cc:
modified banner message
2011-11-24 Gavin SALAM <salam@lpthe.jussieu.fr>
* COPYING:
have reworded this in various places to give a better overview
at the start of the file and a discussion of references that's
similar to what we have on the "About" page of the website.
* src/Voronoi.cc:
* plugins/ATLASCone/ATLASConePlugin.cc:
typos
* example/fastjet_timing_plugins.cc:
added -all-algs option to run all algorithms and -file option to
read events from a file. You can now also specify multiple
algorithms, e.g. -kt -cam.
NB: the algorithms loop is the outer one, and event-reading is
done in an innter an iev loop; -all-algs must be used in
conjunction with -file if you want the same set of particles to
be used for each jet alg.
* include/fastjet/ClusterSequence.hh:
* src/ClusterSequence.hh:
* plugins/D0RunIICone/D0RunIIConePlugin.cc
* plugins/CDFCones/CDFMidPointPlugin.cc
* plugins/CDFCones/CDFJetCluPlugin.cc
* plugins/PxCone/PxConePlugin.cc
* plugins/SISCone/siscone
* plugins/CMSIterativeCone/CMSIterativeConePlugin.cc
* plugins/D0RunICone/D0RunIBaseConePlugin.cc
* plugins/TrackJet/TrackJetPlugin.cc
* plugins/ATLASCone/ATLASConePlugin.cc
access to banner ostream is now through the cleaner
CS::fastjet_banner_stream() member + renamed
CS::fastjet_banner_ostr -> CS::_fastjet_banner_ostr and made it
private.
2011-11-24 Gregory Soyez <soyez@fastjet.fr>
* plugins/D0RunICone/D0RunIBaseConePlugin.cc (_print_banner):
updated the version availability (3.0 rather than 2.4)
2011-11-24 Gavin Salam <salam@lpthe.jussieu.fr>
* NEWS:
prepared preliminary summary of changes
2011-11-24 Gregory Soyez <soyez@fastjet.fr>
* plugins/D0RunIICone/D0RunIIConePlugin.cc:
* plugins/D0RunIICone/fastjet/D0RunIIConePlugin.hh:
* plugins/D0RunICone/fastjet/D0RunIpre96ConePlugin.hh:
* plugins/D0RunICone/fastjet/D0RunIConePlugin.hh:
* plugins/D0RunICone/D0RunIBaseConePlugin.cc:
* plugins/D0RunICone/HepEntityIpre96.h:
* plugins/D0RunICone/HepEntityI.h:
* plugins/D0RunICone/ConeClusterAlgo.hpp:
* plugins/D0RunICone/inline_maths.h:
* plugins/D0RunIICone/ILConeAlgorithm.hpp:
* plugins/D0RunIICone/ProtoJet.hpp:
* plugins/D0RunIICone/ConeSplitMerge.hpp:
* plugins/D0RunIICone/ConeJetInfo.hpp:
* plugins/D0RunIICone/HepEntity.h:
* plugins/D0RunIICone/inline_maths.h:
added a history of Changes + a banner
* COPYING:
mentioned the origin of the D0 code
* plugins/TrackJet/fastjet/TrackJetPlugin.hh:
* plugins/TrackJet/TrackJetPlugin.cc:
* plugins/PxCone/fastjet/PxConePlugin.hh:
* plugins/PxCone/PxConePlugin.cc:
* plugins/CMSIterativeCone/fastjet/CMSIterativeConePlugin.hh:
* plugins/CMSIterativeCone/CMSIterativeConePlugin.cc:
* plugins/CDFCones/fastjet/CDFMidPointPlugin.hh:
* plugins/CDFCones/fastjet/CDFJetCluPlugin.hh:
* plugins/CDFCones/CDFMidPointPlugin.cc:
* plugins/CDFCones/CDFJetCluPlugin.cc:
* plugins/ATLASCone/fastjet/ATLASConePlugin.hh:
* plugins/ATLASCone/ATLASConePlugin.cc:
print the banner to FJ's ClusterSequence::fastjet_banner_ostr
+ removed 'disable_banner()'
* include/fastjet/ClusterSequence.hh:
* src/ClusterSequence.cc (_print_banner):
added ClusterSequence::fastjet_banner_ostr. This is a (pointer
to a) stream where the banner will be printed.
2011-11-23 Gavin Salam <salam@lpthe.jussieu.fr>
* src/ClusterSequence.cc (ClusterSequence::_print_banner):
updated banner following morning's discussion.
2011-11-22 Gavin Salam <salam@lpthe.jussieu.fr>
* example/10-subjets.cc:
sorted out residual warning.
* plugins/D0RunICone/fastjet/D0RunIpre96ConePlugin.hh:
* plugins/D0RunICone/fastjet/D0RunIBaseConePlugin.hh
* plugins/D0RunICone/fastjet/D0RunIConePlugin.hh:
replaced CONrad -> CONErad.
2011-11-22 Gregory Soyez <soyez@fastjet.fr>
* plugins/ATLASCone/fastjet/ATLASConePlugin.hh:
* plugins/ATLASCone/ATLASConePlugin.cc:
added a banner
* plugins/ATLASCone/Makefile.am (libATLASConePlugin_la_SOURCES):
removed empty source files
* plugins/ATLASCone/CommonUtils.hh:
* plugins/ATLASCone/JetConeFinderTool.cc:
* plugins/ATLASCone/JetConeFinderTool.hh:
* plugins/ATLASCone/JetDistances.hh:
* plugins/ATLASCone/Jet.cc:
* plugins/ATLASCone/Jet.hh:
* plugins/ATLASCone/JetSplitMergeTool.cc:
* plugins/ATLASCone/JetSplitMergeTool.hh:
* plugins/ATLASCone/LorentzVector.hh:
added information about the file origin + a history of changes
* COPYING:
added info about all plugins written by the FastJet authors
* plugins/PxCone/PxConePlugin.cc (_print_banner):
* plugins/CMSIterativeCone/CMSIterativeConePlugin.cc (_print_banner):
* plugins/CDFCones/CDFJetCluPlugin.cc (_print_banner):
* plugins/CDFCones/CDFMidPointPlugin.cc (_print_banner):
* plugins/PxCone/fastjet/PxConePlugin.hh:
* plugins/CMSIterativeCone/fastjet/CMSIterativeConePlugin.hh:
* plugins/TrackJet/fastjet/TrackJetPlugin.hh:
removed an unwanted 'const'
2011-11-22 Gavin Salam <salam@lpthe.jussieu.fr>
* plugins/PxCone/pxcone.f (PXCONE):
added some info about licensing in this file.
2011-11-22 Gregory Soyez <soyez@fastjet.fr>
* plugins/CDFCones/CDFcode/PhysicsTower.hh:
* plugins/CDFCones/CDFcode/MidPointAlgorithm.hh:
* plugins/CDFCones/CDFcode/JetCluAlgorithm.cc:
* plugins/CDFCones/CDFcode/JetCluAlgorithm.hh:
* plugins/CDFCones/CDFcode/LorentzVector.hh:
* plugins/CDFCones/CDFcode/ClusterComparisons.hh:
* plugins/CDFCones/CDFcode/Cluster.hh:
* plugins/CDFCones/CDFcode/Centroid.hh:
* plugins/CDFCones/CDFcode/CalTower.hh:
added info about permission for distribution + history of
changes
* plugins/CDFCones/CDFcode/Makefile.am:
removed empty files
* plugins/TrackJet/TrackJetPlugin.cc:
* plugins/TrackJet/fastjet/TrackJetPlugin.hh:
added license information + print a banner at first usage
* plugins/PxCone/fastjet/PxConePlugin.hh:
* plugins/PxCone/PxConePlugin.cc:
print a banner at first usage
* plugins/PxCone/README:
mentioned the list of changes in pxcone.f
* plugins/CMSIterativeCone/SortByEt.h:
* plugins/CMSIterativeCone/CMSIterativeConePlugin.cc:
inserted a proper license description and a list of changes
compared to the original CMS code + print a banner at 1st use
* COPYING:
added a series of license agreements for 3rd party plugins
2011-11-21 Gregory Soyez <soyez@fastjet.fr> + Gavin
* tools/MassDropTagger.cc (result):
replaced m() by equivalent expressions using m2()
* tools/fastjet/tools/MassDropTagger.hh:
used a WrappedStructure instead of a CompositeJetStructure for
the base MassDropTaggerStructure class.
2011-11-20 Gregory Soyez <soyez@fastjet.fr>
* configure.ac:
put the extra warnings (-ansi -pedantic -Wextra -Wshadow)
under a --enable-extra-warnings configure flag
2011-11-20 Gavin Salam <salam@lpthe.jussieu.fr>
* include/fastjet/PseudoJet.hh:
added pt(), pt2(), mt() and mt2() methods.
* src/GhostedAreaSpec.cc:
* include/fastjet/GhostedAreaSpec.hh:
switched kt -> pt in default function names; kept copies of
functions with "kt" in name for backwards compatibility.
* test-script-output-orig.txt:
edits of kt -> pt given change in GAS.
2011-11-17 Gavin Salam <salam@lpthe.jussieu.fr>
* src/ClusterSequence.cc:
* include/fastjet/internal/base.hh:
moved the doxygen group list out of base.hh and into
ClusterSequence.cc; also added reference plugins where we mentioned
JetDefinition (otherwise it's a fairly non-obvious two clicks
away from the main page).
2011-11-17 Gregory Soyez <soyez@fastjet.fr>
* src/ClusterSequence.cc (_decant_options):
added a missing call to _decant_options_partial()
(needed for proper initialisation as used e.g. in cases with
area)
2011-11-16 Gavin Salam <salam@lpthe.jussieu.fr>
* src/ClusterSequence.cc:
* include/fastjet/ClusterSequence.hh (template):
constructor now uses an initialisation list for things like the
_jet_def that are substantial and that one doesn't want to be
initialising twice. Also introduced _decant_options_partial()
and _initialise_and_run_no_decant(), which are now used directly
in the constructor. The calls _decant_options(...) and
_initialise_and_run(...) are maintained and just do the relevant
extra bits and pieces before calling _decant_options_partial()
and _initialise_and_run_no_decant() respectively. This shaves
off about 0.1 microseconds (can be relevant at low N).
* src/JetDefinition.cc (JetDefinition::JetDefinition):
removed function-wide ostringstream (for errors) in constructor,
which was causing a 0.6 microsecond time penalty, and replaced
it with oss's created only when an error condition is actually
seen.
2011-11-16 Gregory Soyez <soyez@fastjet.fr>
* example/fastjet_timing_plugins.cc:
added a -repeat-incl <ptmin> option to show the jets above ptmin
at each repetition of the clustering
[modified it so that the jets are just extracted and sorted but
not printed]
* configure.ac:
increased the level of warnings in the default compilation flags
* example/10-subjets.cc:
* example/04-constituents.cc:
* example/fastjet_timing_plugins.cc:
* example/fastjet_areas.cc (print_jets):
replaced/cast size_t by/to unsigned int
(this is mostly to avoid a compiler warning related to the fact
that size_t is equivalent to ungigned int on 32-bit machines and
long unsigned int on 64)
2011-11-16 Gavin Salam <salam@lpthe.jussieu.fr>
* src/ClusterSequence.cc:
lowered switchover point from N2Plain -> N2Tiled based on
observations from Gregory and me on more modern computers than
were used in the original studies (presumably larger cache is at
play).
2011-11-15 Gregory Soyez <soyez@fastjet.fr>
* src/ClusterSequence_TiledN2.cc (_minheap_faster_tiled_N2_cluster):
added a note about a gcc "may-be-used-uninitialised" warning
which is irrelevant.
* include/fastjet/NNH.hh (set_NN_nocross):
replaced 'head' and 'tail' by the parameters 'begin' and 'end'
(respectively). Note that all the calls to set_NN_nocross have
begin==head and end==tail so this is equivalent. But it is cleaner
and avoids a compiler warning.
* plugins/PxCone/fastjet/PxConePlugin.hh (ctor):
renamed arguments to avoid shadowing class members
* plugins/SISCone/fastjet/SISConeSphericalPlugin.hh:
removed extraneous ;
* src/CompositeJetStructure.cc (ctor):
renamed a local var to avoid shadowing a class member
2011-11-14 Gavin Salam <salam@lpthe.jussieu.fr>
* tools/Filter.cc:
* tools/fastjet/tools/Filter.hh:
Reworked use of _subjet_def and _selector so that they are no
longer mutable. Also arranged for description to be more
accurate.
2011-11-14 Gregory Soyez <soyez@fastjet.fr>
* tools/Filter.cc (_get_all_pieces, ...):
removed the internal mutable all_pieces variable and pass
instead an argument to the appropriate functions
* plugins/D0RunICone/HepEntityIpre96.h:
* plugins/D0RunICone/HepEntityI.h:
* plugins/ATLASCone/Jet.hh:
* plugins/ATLASCone/LorentzVector.hh:
* plugins/D0RunIICone/ILConeAlgorithm.hpp:
* plugins/D0RunIICone/ProtoJet.hpp:
* plugins/D0RunIICone/ConeJetInfo.hpp:
* plugins/CDFCones/CDFcode/LorentzVector.hh:
* include/fastjet/internal/Voronoi.hh:
* src/Voronoi.cc:
started/completed a history of Changes to 3rd party code
* plugins/CDFCones/CDFcode/CalTower.hh (ctor):
added a few () to get rid of a gcc warning
* src/ClusterSequence_DumbN3.cc (_really_dumb_cluster):
marked as obsolete a part of the code that was associated with
another obsolete part of the code
* tools/fastjet/tools/Filter.hh:
* tools/Filter.cc:
removed all_pieces as the 2nd argument of get_all_pieces: this
is a member variable of the class so there is no need to pass it
as an argument.
* src/ClusterSequence_TiledN2.cc (_tiled_N2_cluster,
_minheap_faster_tiled_N2_cluster, _faster_tiled_N2_cluster):
replaced Tile * tile by Tile * tile_ptr to avoid a
shadowing (gcc -Wshadow warning)
* example/09-user_info.cc (MyUserInfo ctor):
* example/fastjet_timing_plugins.cc (main):
* plugins/D0RunICone/fastjet/D0RunIpre96ConePlugin.hh (ctor):
* plugins/D0RunICone/fastjet/D0RunIConePlugin.hh (ctor):
* plugins/D0RunICone/fastjet/D0RunIBaseConePlugin.hh (ctor):
* plugins/D0RunICone/HepEntityIpre96.h (ctor, Fill):
* plugins/D0RunICone/HepEntityI.h (ctor, Fill):
* plugins/EECambridge/fastjet/EECambridgePlugin.hh (ctor):
* plugins/ATLASCone/fastjet/ATLASConePlugin.hh (ctor):
* plugins/ATLASCone/Jet.hh (ctor):
* plugins/ATLASCone/LorentzVector.hh (ctor):
* plugins/D0RunIICone/ILConeAlgorithm.hpp (TemporaryJet ctor, midpoint):
* plugins/D0RunIICone/ProtoJet.hpp (ctor,setJet):
* plugins/D0RunIICone/ConeJetInfo.hpp (ctors):
* plugins/D0RunIICone/fastjet/D0RunIIConePlugin.hh (ctor):
* plugins/CDFCones/fastjet/CDFMidPointPlugin.hh (ctors):
* plugins/CDFCones/fastjet/CDFJetCluPlugin.hh (ctors):
* plugins/CDFCones/CDFcode/LorentzVector.hh (ctor):
* plugins/SISCone/fastjet/SISConePlugin.hh (ctors):
* plugins/SISCone/fastjet/SISConeSphericalPlugin.hh (ctor):
* include/fastjet/NNH.hh (init, other_init):
* tools/TopTaggerBase.cc (_cos_theta_W):
* tools/JHTopTagger.cc (result, _split_once):
* tools/CASubJetTagger.cc (result):
* tools/RestFrameNSubjettinessTagger.cc (result):
* tools/fastjet/tools/JHTopTagger.hh (ctor):
* tools/fastjet/tools/TopTaggerBase.hh (description_of_selectors):
* tools/fastjet/tools/Boost.hh (result):
* tools/fastjet/tools/RestFrameNSubjettinessTagger.hh (ctor):
* tools/MassDropTagger.cc (result):
* tools/fastjet/tools/MassDropTagger.hh (ctor):
* tools/Pruner.cc (result):
* tools/fastjet/tools/JetMedianBackgroundEstimator.hh (set_rescaling_class):
* tools/GridMedianBackgroundEstimator.cc (set_rescaling_class):
* tools/JetMedianBackgroundEstimator.cc (set_jet_density_class):
* tools/fastjet/tools/BackgroundEstimatorBase.hh (set_rescaling_class):
* include/fastjet/ClusterSequenceArea.hh (initialize_and_run_cswa):
* src/Error.cc (ctor):
* src/ClusterSequence1GhostPassiveArea.cc (_initialise_and_run_1GPA):
* src/ClusterSequencePassiveArea.cc (_initialise_and_run_PA):
* src/ClusterSequenceVoronoiArea.cc (_initializeVA):
* include/fastjet/ClusterSequenceVoronoiArea.hh (ctor):
* src/Voronoi.cc (generateVoronoi):
* src/ClusterSequenceActiveArea.cc (_initialise_and_run_AA,
_initialise_AA, _transfer_areas):
* src/GhostedAreaSpec.cc (ctor):
* src/PseudoJet.cc (ctor, boost, unboostm set_cached_rap_phi,
set_structure_shared_ptr, reset_momentum_PtYPhiM):
* src/JetDefinition.cc (ctor):
* include/fastjet/ClusterSequenceArea.hh (ctors):
* include/fastjet/AreaDefinition.hh (VoronoiAreaSpec):
* include/fastjet/ClusterSequence1GhostPassiveArea.hh (ctor):
* include/fastjet/ClusterSequencePassiveArea.hh (ctor):
* include/fastjet/ClusterSequenceActiveArea.hh (ctor):
* src/ClusterSequenceActiveAreaExplicitGhosts.cc (empty_area):
* include/fastjet/ClusterSequenceActiveAreaExplicitGhosts.hh (ctors,
_initialise):
* include/fastjet/ClusterSequenceAreaBase.hh (ctor):
* src/ClusterSequenceAreaBase.cc (subtracted_jets):
* src/Selector.cc (count, operator(), sift):
* include/fastjet/GhostedAreaSpec.hh (ctors):
* src/ClusterSequence.cc (_initialise_and_run, _decant_options,
inclusive_jets, exclusive_jets_up_to, print_jets_for_root,
particle_jet_indices):
* include/fastjet/ClusterSequence.hh (ctor):
* include/fastjet/Selector.hh (ctor):
* include/fastjet/JetDefinition.hh (ctors):
* include/fastjet/internal/DynamicNearestNeighbours.hh (ctor):
* include/fastjet/PseudoJet.hh (reset_PtYPhiM, reset, reset_momentum):
added a '_in' suffix to some variables passed as argument to
avoid a shadowing gcc warning, and a '_local' suffix for similar
local variables.
Note that these warnings were anyway harmless as they were
shadowing unused methods.
* include/fastjet/internal/Voronoi.cc:
* src/Voronoi.cc:
- removed 'plot' and 'triangulate' (were always 0)
- removed unused plot functions (openpl, circle, range,
out_bisector, out_ep, out_vertex, out_site, out_triple)
- removed unused 'VPoint p' in 'intersect'
- fixed missing changes in earlier history
* include/fastjet/internal/Voronoi.cc:
* src/Voronoi.cc:
added a summary of changes compared to the original code by
S. O'Sullivan
* example/14-groomers.cc:
* example/13-boosted_top.cc:
* example/12-boosted_higgs.cc:
* example/11-filter.cc:
* example/09-user_info.cc:
* example/08-selector.cc:
* example/07-subtraction.cc:
* example/06-area.cc:
* example/05-eplus_eminus.cc:
* example/04-constituents.cc:
* example/03-plugin.cc:
* example/02-jetdef.cc:
* example/01-basic.cc:
* example/fastjet_example.cc:
* example/fastjet_areas.cc:
* example/fastjet_timing_plugins.cc:
. removed some unused method parameters
. fixed format warnings for fprintf
* tools/Filter.cc:
* include/fastjet/ClusterSequenceVoronoiArea.hh:
* tools/fastjet/tools/BackgroundEstimatorBase.hh:
commented out unused method parameters
removed extraneous ';'
* include/fastjet/NNH.hh:
removed some unused method parameters
2011-11-13 Gregory Soyez <soyez@fastjet.fr>
* src/CompositeJetStructure.cc:
* src/JetDefinition.cc:
* include/fastjet/CompositeJetStructure.hh:
commented out unused method parameters
* src/PseudoJetStructureBase.cc:
commented out the name of unused parameters in a few methods to
remove a compiler warning coming with -Wunused-parameter (and
-Wextra)
* src/Selector.cc (SelectorWorker):
removed the name of unused parameters in a few methods to remove
a compiler warning coming with -Wunused-parameter (and -Wextra)
2011-11-12 Gregory Soyez <soyez@fastjet.fr>
* src/Selector.cc (SelectorWorker):
typo in comment
* include/fastjet/SharedPtr.hh (SharedPtr):
. in the postfix increment and decrement operators, replaced
"int unused" by "int" to avoid a compiler warning. Note that
this dummy var is just a C++ trick to differentiate the
postfix from the prefix operators.
. used the prefix operator instead of the postfix one whenever
possible
2011-11-12 Gavin Salam <salam@lpthe.jussieu.fr>
* tools/fastjet/tools/Filter.hh:
added reference to manual for a simple example of a Filter
implementation.
* include/fastjet/PseudoJet.hh:
added a bunch of shorthands such as has_valid_cs() so as to
coincide with table 3.
* include/fastjet/SharedPtr.hh:
fixed typo in comment.
2011-11-11 Gavin Salam <salam@lpthe.jussieu.fr>
* include/fastjet/ClusterSequence.hh:
* src/ClusterSequence.cc:
moved main page of doxygen documentation into .cc file
to avoid big recompilation at every change.
* include/fastjet/Selector.hh:
* include/fastjet/PseudoJet.hh:
* include/fastjet/SharedPtr.hh:
* include/fastjet/PseudoJetStructureBase.hh:
commented out unused dummy arguments to avoid compiler warnings.
2011-11-09 Gavin Salam <gsalam@macth69.cern.ch>
* plugins/PxCone/README:
added copy of email from Mike Seymour granting authorization to
distribute under GPLv2.
2011-11-08 Gregory Soyez <soyez@fastjet.fr>
* autogen.sh:
* configure.ac:
* config.h.siscone.in: *** ADDED ***
added the necessary steps to configure/build SISCone directly
from the FastJet configure/build system. This has mailny the
advantage to reduce the size of the distribution (1.7MB instead
of 2.0MB) and save a bit of time during configuration. However
it comes at the expense that we have to hardcode the SISCone
version in a new configuration (auto)header --- since it would
no longer be obtained from SISCone's configure.ac. Therefore, we
stick to the old situation and comment out the inclusion of
SISCone configuration into FastJet's.
2011-11-07 Gregory Soyez <soyez@fastjet.fr>
* configure.ac (AC_PROG_FC):
when searching for a Fortran compiler, make sure one is actually
found or exit with an error message.
2011-11-07 Gavin SALAM <salam@lpthe.jussieu.fr> + Matteo & Gregory
* plugins/SISCone/SISConeSphericalPlugin.cc (run_clustering):
* plugins/SISCone/SISConePlugin.cc (run_clustering):
jets' user indices are no longer set to the pass from which they
come.
* include/fastjet/PseudoJet.hh (P):
added validated_cluster_sequence() and
validated_cluster_sequence_area_base().
2011-10-31 Gavin SALAM <salam@lpthe.jussieu.fr> + Matteo
* doc/fastjet-doc.tex:
- moved strategies into an appendix of their own; we should add
timing fig. there
- documented deprecation of JetFinder and JD(jet_alg, R,
strategy) in relevant appendix
- various other small changes up to end of section 3.3;
next question is whether to move reco-schemes into an
appendix.
* include/fastjet/JetDefinition.hh:
removed some old commented code
* src/PseudoJet.cc (description):
fixed typo in default description
2011-10-28 Gregory Soyez <soyez@fastjet.fr> & Matteo
* doc/fastjet-doc.tex:
reworked Section 7 (jet areas):
- rephrased slightly the introduction (mostly added a brief
usage example) to avoid being too technical
- reorganised the description of ClusterSequenceArea to reflect
the fact that jet-area information can directly be accessed
through PseudoJet.
reworked Section 8 (background estim+subtraction):
- moved the section about the subtraction higher up (in Section
on general usage)
- positional dependence: made explicit that rho(jet) and
sigma(jet) work for both the JMBGE and the GMBGE, as well as
for both techniques (selector-based and rescaling-based)
* include/fastjet/ClusterSequenceArea.hh:
fixed a typo in the Doxygen comments
2011-10-21 Gregory Soyez <soyez@fastjet.fr>
* BUGS:
mention the release of CGAL-3.9
2011-10-09 Gavin SALAM <salam@lpthe.jussieu.fr>
* include/fastjet/ClusterSequence.hh:
changed link to fastjet main page in doxygen main page.
* Doxyfile (PROJECT_NUMBER):
* doc/fastjet-doc.tex:
* configure.ac:
switched version over to 3.0.1-devel
* plugins/SISCone:
switched it back to trunk
2011-10-09 Gregory Soyez <soyez@fastjet.fr> & Matteo & Gavin
Release of FastJet 3.0.0
2011-10-09 Gavin Salam <salam@lpthe.jussieu.fr>
* src/ClusterSequenceActiveAreaExplicitGhosts.cc (ClustSeqActAreaEG::_post_process):
replaced area_4vectors[i] = _jets[i] with
_area_4vectors[i].reset_momentum(_jets[i]);
so that areas are structure-free (and so they don't mess
up the use count, leading to potential memory leaks). Checked
this solves the leak found in the 11-filter example.
* INSTALL: added a note about the old compilation system not
working.
* NEWS: updated release date
* BUGS: fixed some wording in a few places.
* CHECKLIST included a line for checks on the examples.
2011-10-09 Matteo Cacciari <cacciari@lpthe.jussieu.fr>
* INSTALL: reworked a bit the initial part, updated the list
of examples
2011-10-08 Gregory Soyez <soyez@fastjet.fr>
* TODO: removed done items
2011-10-06 Gregory Soyez <soyez@fastjet.fr>
* plugins/D0RunICone/D0RunIBaseConePlugin.cc:
inverted the order of the include files (this works
around an anonymous enum bug in gcc-4.0.1 on Macs)
* plugins/SISCone"
switched to SISCone 2.0.3
* doc/fastjet-doc.tex:
* include/fastjet/config_win.h:
* Doxyfile-devel:
* Doxyfile:
* configure.ac:
switched version number to 3.0.0
* plugins/D0RunICone/inline_maths.h:
* plugins/D0RunICone/HepEntityI.h:
* plugins/D0RunICone/ConeClusterAlgo.hpp:
* plugins/D0RunICone/HepEntityIpre96.h:
put the d0runi namespace inside the FastJet namespace
* plugins/D0RunICone/ConeClusterAlgo.hpp:
reverted a misordered #endif and namespace }
* include/fastjet/internal/IsBase.hh:
fised a typo in a class name in a doxygen comment
* src/genconfig.sh:
added the FASTJET_ prefix for the GridJet plugin
2011-09-29 Gavin Salam <salam@lpthe.jussieu.fr>
* tools/*.cc:
* tools/fastjet/tools/*.hh:
replaced tabs with spaces
2011-09-28 Gavin SALAM <salam@lpthe.jussieu.fr> + Matteo + Gregory
* example/fastjet_areas.cc:
* test-script-output-orig.txt:
switched "make check" area test over to active area (new ghost
placement).
* example/07 upwards-*.cc updates:
added using namespace fastjet and removed redundant fastjet::
* example/14-groomers.cc:
small changes to comments + addition of header
* example/11-filter.cc:
addition of header
2011-09-28 Matteo Cacciari <cacciari@lpthe.jussieu.fr>
* example/14-groomers.cc ** ADDED **
added example showing unified use of filtering, trimming,
pruning
2011-09-28 Gregory Soyez <soyez@fastjet.fr>
* NEWS:
mentioned libfastjettools
2011-09-27 Gavin Salam <salam@lpthe.jussieu.fr>
* tools/Pruner.cc (Pruner::result):
removed extraneous cout.
2011-09-26 Gavin SALAM <salam@lpthe.jussieu.fr> + Matteo & Gregory
* include/fastjet/GhostedAreaSpec.cc:
* src/GhostedAreaSpec.cc:
added warning for when set_fj2_placement(true) is called.
2011-09-25 Gregory Soyez <soyez@fastjet.fr>
* tools/JetMedianBackgroundEstimator.cc (set_particles):
Bug fixed: simply set _uptodate to false instead of calling
reset(). This avoids that in code like
jmbge.set_rescaling_class(...);
jmbge.set_particles(...)\
the 2nd call resets the rescaling class to NULL (erasing the
effect of the 1st one)
2011-09-23 Gavin SALAM <salam@lpthe.jussieu.fr> + Matteo & Gregory
* include/fastjet/ClusterSequence.hh:
* src/ClusterSequence.cc:
removed old (and objectionable) constructor that took just R
rather than a jet_def; also removed set_jet_algorithm and
set_jet_def and related _default_jet_algorithm private variable.
* include/fastjet/internal/Triangulation.hh:
moved the include guards.
* tools/Makefile.am:
* tools/JHTopTagger.cc:
* tools/TopTaggerBase.cc (_cos_theta_W): *** ADDED ***
moved the _cos_theta_W(...) call into a new file
TopTaggerBase.cc (also modified the .hh files)
2011-09-17 Gavin Salam <salam@lpthe.jussieu.fr>
* src/JetDefinition.cc:
* include/fastjet/JetDefinition.hh:
moved max_allowable_R value into .cc file to try and resolve
problem on karnak.
2011-09-16 Gavin Salam <salam@lpthe.jussieu.fr> + Matteo
* tools/Filter.cc:
fixed a bug whereby the recombiner in the internal jet def may
point to a default recombiner that gets deleted before retuning
the filtered jet to the user; see also the BUGS file for a
residual issue in the case of recombiners that delete
themselves.
* tools/Pruner.cc (and .hh):
- added "minimal" constructor that takes a jet_alg (rather than
jet_def), automatically sets the R to
JetDefinition::max_allowable_R and deduces the recombiner
from the jet that is being Pruned.
- removed _recursively_mark_as_rejected, since no longer needed.
- added a "return true" in _check_explicit_ghosts to fix a bug
in the case of jets with pieces, so that areas were not available
- fixed a bug whereby internal pruning plugin was being deleted
too early
* include/fastjet/JetDefinition.hh:
* include/fastjet/JetDefinition.cc:
changed hard-coded limit for R of 1000 into
JetDefinition::max_allowable_R, with extra comments;
replaced assertion with throw for when the condition is not
satisfied.
2011-09-13 Gavin Salam <salam@lpthe.jussieu.fr> + Matteo
* tools/fastjet/tools/RestFrameNSubjettinessTagger.hh:
* tools/fastjet/tools/BackgroundEstimatorBase.hh:
* tools/fastjet/tools/JetMedianBackgroundEstimator.hh:
* tools/fastjet/tools/GridMedianBackgroundEstimator.hh:
small mods and fixes to doxygen