A script to merge and optionally validate several MS Annika search results.
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Updated
Jan 24, 2024 - Python
A script to merge and optionally validate several MS Annika search results.
List of all available extensions for our cross-linking search engine MS Annika.
Extensions to use the cross-linking tool Scout with other software.
Results and Evaluation of the MS3 Search Algorithm of MS Annika.
Helper scripts for crosslink analysis.
Modeling of the yeast Mediator complex
My Z80 Tools - Credits to Piergiorgio Betti - https://www.z80cpu.eu/projects/78-data-articles/projects/76-mdz80
Modeling of the TFIIH complex using chemical cross-links and electron microscopy (EM) density maps
Modeling of the Nup82 subcomplex of the Nuclear Pore Complex
Export MS Annika crosslink results to different formats.
Extensions for better usability of the cross-linking tool MaXLinker.
Calculates Intensities of Cross-linked Peptides from MS Annika CSMs.
A script and functions to group and validate MS Annika results.
Short Talk Presentation for APMRS 2022
MS Annika is a crosslink search engine based on MS Amanda, aimed at identifying crosslinks of MS2-cleavable crosslinkers from MS2 and MS3 spectra.
Modeling the structures of complexes between the 26S proteasome and proteasome interacting proteins
A fast and exhaustive cross-linked peptides identification tool.
A bash script that simplifies the installation and setup of the xQuest/xProphet pipeline and creates a directory structure to ensure an easy use. Command-line beginner friendly.
Generate a spectral library for Spectronaut from MS Annika results.
Add a description, image, and links to the cross-linking topic page so that developers can more easily learn about it.
To associate your repository with the cross-linking topic, visit your repo's landing page and select "manage topics."