ODE system solver using dG(q), time-discontinuous Galerkin with Lobatto basis.
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Updated
Apr 27, 2017 - Python
ODE system solver using dG(q), time-discontinuous Galerkin with Lobatto basis.
Very simple image proccesing and other
Euler's Approximation to an ODE with initial conditions provided.
PFR model for the acid-catalyzed dehydration of fructose to HMF using HCl as the catalyst and generates the kinetic data for conversion, yield, and selectivity of the species as a function of temperature, pH, and time. The model is available in both Python and MATLAB.
MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.
Python Classical RK4 ODE Solver for System of Two Ordinary Differential Equations - possibility for extension to other ODE systems
Stochastic Cellular Automata epidemic models in Python with 2D simulations
This repository contains all the code used for the publication "Mitochondria morphology provides a mechanism for energy buffering at synapses ".
ODESSA - ODE System Solving Accelerator
Shinohara, H. et al. Positive feedback within a kinase signaling complex functions as a switch mechanism for NF-κB activation. Science (80-. ). 344, 760–764 (2014).
Modeling signaling networks in cancer
Following Maths and modeling by Gaurav Deshmukh, we model the Three Body Problem. Using provided models and Maths, I am creating an editable simulator. Future goals include: UI for inputting data, savable and exportable calculated data, and a curve plotting tool.
Hatakeyama, M. et al. A computational model on the modulation of mitogen-activated protein kinase (MAPK) and Akt pathways in heregulin-induced ErbB signalling. Biochem. J. 373, 451–463 (2003).
Birtwistle, M. R. et al. Ligand-dependent responses of the ErbB signaling network: Experimental and modeling analyses. Mol. Syst. Biol. 3, (2007).
Nakakuki, T. et al. Ligand-specific c-Fos expression emerges from the spatiotemporal control of ErbB network dynamics. Cell 141, 884–896 (2010).
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