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UGraphEmb

This repository is the implementation of "Unsupervised Inductive Graph-Level Representation Learning via Graph-Graph Proximity".

Yunsheng Bai, Hao Ding, Yang Qiao, Agustin Marinovic, Ken Gu, Ting Chen, Yizhou Sun, and Wei Wang. 2019. Unsupervised Inductive Graph-Level Representation Learning via Graph-Graph Proximity. IJCAI (2019).

Data Files

Download the data files from https://drive.google.com/drive/folders/1XWkQmrqQxwsZ9KvCZwcOyDgAVPfbDBM3?usp=sharing

Extract under /data and /save.

Dependencies

Install the following the tools and packages:

  • python3: Assume python3 by default (use pip3 to install packages).
  • numpy
  • pandas
  • scipy
  • scikit-learn
  • tensorflow (1.8.0 recommended)
  • networkx==1.10 (NOT 2.1)
  • beautifulsoup4
  • lxml
  • matplotlib
  • seaborn
  • colour
  • pytz
  • requests
  • klepto

Reference commands: sudo pip3 install numpy pandas scipy scikit-learn tensorflow networkx==1.10 beautifulsoup4 lxml matplotlib seaborn colour pytz requests klepto

Tips for PyCharm Users

  • If you see red lines under import, mark src and model/Siamese as Source Root, so that PyCharm can find those files.
  • Mark src/Siamese/logs as Excluded, so that PyCharm won't spend time inspecting those logs.

Run

Example commands to run our model:

cd model/Siamese
python3.5 run.py