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python-package.yml
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# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions
name: Linux Testing
on:
push:
branches: [ main ]
pull_request:
branches: [ main ]
jobs:
build:
runs-on: ubuntu-latest
strategy:
matrix:
python-version: ['3.10', '3.11', '3.12']
numpy_version: ['>=2.1', '==1.24.*']
exclude:
- python-version: '3.12'
numpy_version: '==1.24.*'
services:
redis:
image: redis
# Set health checks to wait until redis has started
options: >-
--health-cmd "redis-cli ping"
--health-interval 10s
--health-timeout 5s
--health-retries 5
ports:
- 6379:6379
mongodb:
image: mongo:4.4.11
ports:
- 27017:27017
steps:
- uses: actions/checkout@v4
with:
fetch-depth: 0
- name: Setup Miniconda
uses: conda-incubator/setup-miniconda@v3.0.4
with:
channels: conda-forge
python-version: ${{ matrix.python-version }}
env:
ACTIONS_ALLOW_UNSECURE_COMMANDS: true
# Runs a set of commands using the runners shell
- name: Create Conda environment with the rights deps
shell: "bash -l {0}"
run: |
conda create -n zarr-env python==${{matrix.python-version}} bsddb3 pip nodejs
conda activate zarr-env
npm install -g azurite
- name: Install dependencies
shell: "bash -l {0}"
run: |
conda activate zarr-env
python -m pip install --upgrade pip
python -m pip install -r requirements_dev_minimal.txt numpy${{matrix.numpy_version}} -r requirements_dev_optional.txt line_profiler pymongo redis
python -m pip install -e .
python -m pip freeze
- name: Tests
shell: "bash -l {0}"
env:
COVERAGE_FILE: .coverage.${{matrix.python-version}}.${{matrix.numpy_version}}
ZARR_TEST_ABS: 1
ZARR_TEST_MONGO: 1
ZARR_TEST_REDIS: 1
ZARR_V3_EXPERIMENTAL_API: 1
ZARR_V3_SHARDING: 1
run: |
conda activate zarr-env
mkdir ~/blob_emulator
azurite -l ~/blob_emulator --debug debug.log 2>&1 > stdouterr.log &
pytest --cov=zarr --cov-config=pyproject.toml --doctest-plus --cov-report xml --cov=./ --timeout=300
- uses: codecov/codecov-action@v4
env:
CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
with:
verbose: true # optional (default = false)