diff --git a/Cargo.lock b/Cargo.lock
index c65d3314db070a..a45108aca5f96e 100644
--- a/Cargo.lock
+++ b/Cargo.lock
@@ -1106,7 +1106,7 @@ dependencies = [
  "glibc_version",
  "glob",
  "ignore",
- "import_map",
+ "import_map 0.20.0",
  "indexmap",
  "jsonc-parser",
  "junction",
@@ -1271,7 +1271,7 @@ checksum = "3d21c7b688ff6cb411895a93bf1d6734ed654c3a7eb9b502f96098f6659df0c5"
 dependencies = [
  "anyhow",
  "glob",
- "import_map",
+ "import_map 0.19.0",
  "indexmap",
  "jsonc-parser",
  "log",
@@ -1372,9 +1372,9 @@ dependencies = [
 
 [[package]]
 name = "deno_doc"
-version = "0.139.0"
+version = "0.140.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "c9cd9891748fbd9847c9aeed31635c4c1b5d9a949f6fdd80613b082bdd863518"
+checksum = "c78299b18732d827203ab801f14f4d163ba260eb2b01ebc6e807274d09243fa1"
 dependencies = [
  "ammonia",
  "anyhow",
@@ -1385,7 +1385,7 @@ dependencies = [
  "futures",
  "handlebars",
  "html-escape",
- "import_map",
+ "import_map 0.20.0",
  "indexmap",
  "lazy_static",
  "regex",
@@ -1397,9 +1397,9 @@ dependencies = [
 
 [[package]]
 name = "deno_emit"
-version = "0.42.0"
+version = "0.43.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "25bc64f886c76647400ed8f807ba7dba82e0b52e57e5426a83094cfe22ee19c9"
+checksum = "b4a9faa31cf536b4390073a3d51ec188f0318851961787456e4d91bf0771b634"
 dependencies = [
  "anyhow",
  "base64 0.21.7",
@@ -1407,7 +1407,7 @@ dependencies = [
  "deno_graph",
  "escape8259",
  "futures",
- "import_map",
+ "import_map 0.20.0",
  "parking_lot 0.11.2",
  "url",
 ]
@@ -1468,9 +1468,9 @@ dependencies = [
 
 [[package]]
 name = "deno_graph"
-version = "0.78.1"
+version = "0.79.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "d13080829a06062a14e41e190f64a3407e4a0f63cf7db5dcecbc3cf500445df3"
+checksum = "caa95531b3eb65aced626d8dd8117b29b3e57763e0c1ace502101fb56b8a2c31"
 dependencies = [
  "anyhow",
  "async-trait",
@@ -1480,7 +1480,7 @@ dependencies = [
  "deno_unsync",
  "encoding_rs",
  "futures",
- "import_map",
+ "import_map 0.20.0",
  "indexmap",
  "log",
  "monch",
@@ -2547,9 +2547,9 @@ dependencies = [
 
 [[package]]
 name = "eszip"
-version = "0.71.0"
+version = "0.72.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "3c3763e2d3e56ed5f770f9ab133aca20b1e7fa840f2408f79575ad96f942af2e"
+checksum = "87821a4dc0e26683d866a1841560b99aa9002a60db8a9eded78efe1853144c43"
 dependencies = [
  "anyhow",
  "base64 0.21.7",
@@ -3487,6 +3487,20 @@ dependencies = [
  "url",
 ]
 
+[[package]]
+name = "import_map"
+version = "0.20.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "373b8288ad259df0d1314e3e8b2fff0e5e63f22e01bc54ecd2c3c7ad77b9200c"
+dependencies = [
+ "indexmap",
+ "log",
+ "percent-encoding",
+ "serde",
+ "serde_json",
+ "url",
+]
+
 [[package]]
 name = "indexmap"
 version = "2.2.6"
diff --git a/cli/Cargo.toml b/cli/Cargo.toml
index 67060f5299665a..4a01f2305c1797 100644
--- a/cli/Cargo.toml
+++ b/cli/Cargo.toml
@@ -67,9 +67,9 @@ deno_ast = { workspace = true, features = ["bundler", "cjs", "codegen", "proposa
 deno_cache_dir = { workspace = true }
 deno_config = "=0.16.4"
 deno_core = { workspace = true, features = ["include_js_files_for_snapshotting"] }
-deno_doc = { version = "=0.139.0", features = ["html", "syntect"] }
-deno_emit = "=0.42.0"
-deno_graph = { version = "=0.78.1", features = ["tokio_executor"] }
+deno_doc = { version = "=0.140.0", features = ["html", "syntect"] }
+deno_emit = "=0.43.0"
+deno_graph = { version = "=0.79.0", features = ["tokio_executor"] }
 deno_lint = { version = "=0.60.0", features = ["docs"] }
 deno_lockfile.workspace = true
 deno_npm = "=0.21.4"
@@ -77,7 +77,7 @@ deno_runtime = { workspace = true, features = ["include_js_files_for_snapshottin
 deno_semver = "=0.5.6"
 deno_task_shell = "=0.17.0"
 deno_terminal.workspace = true
-eszip = "=0.71.0"
+eszip = "=0.72.1"
 napi_sym.workspace = true
 
 async-trait.workspace = true
@@ -108,7 +108,7 @@ flate2.workspace = true
 fs3.workspace = true
 glob = "0.3.1"
 ignore = "0.4"
-import_map = { version = "=0.19.0", features = ["ext"] }
+import_map = { version = "=0.20.0", features = ["ext"] }
 indexmap.workspace = true
 jsonc-parser.workspace = true
 jupyter_runtime = { package = "runtimelib", version = "=0.11.0" }
diff --git a/cli/graph_util.rs b/cli/graph_util.rs
index 67c1792937701b..14f0aaace6546c 100644
--- a/cli/graph_util.rs
+++ b/cli/graph_util.rs
@@ -843,7 +843,7 @@ fn get_resolution_error_bare_specifier(
   error: &ResolutionError,
 ) -> Option<&str> {
   if let ResolutionError::InvalidSpecifier {
-    error: SpecifierError::ImportPrefixMissing(specifier, _),
+    error: SpecifierError::ImportPrefixMissing { specifier, .. },
     ..
   } = error
   {
@@ -1065,7 +1065,10 @@ mod test {
           start: Position::zeroed(),
           end: Position::zeroed(),
         },
-        error: SpecifierError::ImportPrefixMissing(input.to_string(), None),
+        error: SpecifierError::ImportPrefixMissing {
+          specifier: input.to_string(),
+          referrer: None,
+        },
       };
       assert_eq!(get_resolution_error_bare_node_specifier(&err), output,);
     }
diff --git a/cli/lsp/diagnostics.rs b/cli/lsp/diagnostics.rs
index f2a22e570afb4a..27983867a60544 100644
--- a/cli/lsp/diagnostics.rs
+++ b/cli/lsp/diagnostics.rs
@@ -1033,7 +1033,7 @@ impl DenoDiagnostic {
               "invalid-local-import"
             }
             ResolutionError::InvalidSpecifier { error, .. } => match error {
-              SpecifierError::ImportPrefixMissing(_, _) => {
+              SpecifierError::ImportPrefixMissing { .. } => {
                 "import-prefix-missing"
               }
               SpecifierError::InvalidUrl(_) => "invalid-url",
diff --git a/cli/standalone/mod.rs b/cli/standalone/mod.rs
index e2a53e4689f614..24ba7c9dbe3735 100644
--- a/cli/standalone/mod.rs
+++ b/cli/standalone/mod.rs
@@ -472,7 +472,7 @@ pub async fn run(
     npm_resolver.clone().into_npm_resolver(),
   ));
   let maybe_import_map = metadata.maybe_import_map.map(|(base, source)| {
-    Arc::new(parse_from_json(&base, &source).unwrap().import_map)
+    Arc::new(parse_from_json(base, &source).unwrap().import_map)
   });
   let cli_node_resolver = Arc::new(CliNodeResolver::new(
     Some(cjs_resolutions.clone()),
diff --git a/cli/tools/compile.rs b/cli/tools/compile.rs
index a29511af41da1c..94bcce7e66e873 100644
--- a/cli/tools/compile.rs
+++ b/cli/tools/compile.rs
@@ -81,12 +81,13 @@ pub async fn compile(
       ts_config_for_emit.ts_config,
     )?;
   let parser = parsed_source_cache.as_capturing_parser();
-  let eszip = eszip::EszipV2::from_graph(
+  let eszip = eszip::EszipV2::from_graph(eszip::FromGraphOptions {
     graph,
-    &parser,
+    parser,
     transpile_options,
     emit_options,
-  )?;
+    relative_file_base: None,
+  })?;
 
   log::info!(
     "{} {} to {}",