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ENH: applytransforms: dont force compose as nii.gz #476

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merged 1 commit into from
Jun 15, 2023
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ENH: applytransforms: dont force compose as nii.gz #476

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5 changes: 4 additions & 1 deletion ants/registration/apply_transforms.py
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Original file line number Diff line number Diff line change
Expand Up @@ -146,7 +146,10 @@ def apply_transforms(fixed, moving, transformlist,
'-r', f,
'-n', interpolator]
args = args + mytx
tfn = '%scomptx.nii.gz' % compose if compose is not None else 'NA'
if compose:
tfn = '%scomptx.nii.gz' % compose if not compose.endswith('.h5') else compose
else:
tfn = 'NA'
if compose is not None:
mycompo = '[%s,1]' % tfn
args = ['-d', fixed.dimension,
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