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Implement consensus peak-calling for replicate samples #129

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merged 10 commits into from
Nov 2, 2023

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@kelly-sovacool kelly-sovacool commented Nov 2, 2023

Changes

  • Add column for replicates to samplesheet
  • Run get_consensus_peaks.py for any samples with more than 1 replicate.

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PR Checklist

(Strikethrough any points that are not applicable.)

  • This comment contains a description of changes with justifications, with any relevant issues linked.
  • [ ] Write unit tests for any new features, bug fixes, or other code changes. testing framework not yet implemented
  • [ ] Update docs if there are any API changes. on hold until before public release
  • If a new nextflow process is implemented, define the process container and stub.
  • Update CHANGELOG.md with a short description of any user-facing changes and reference the PR number. Guidelines: https://keepachangelog.com/en/1.1.0/

@kelly-sovacool kelly-sovacool marked this pull request as ready for review November 2, 2023 21:20
@kelly-sovacool kelly-sovacool merged commit 76fbbaa into main Nov 2, 2023
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@kelly-sovacool kelly-sovacool deleted the replicates branch November 2, 2023 21:37
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Consensus peak calling for replicates sample sheet: add column for replicate
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