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output index from samtools sort #12

Merged
merged 6 commits into from
Oct 19, 2023
Merged

output index from samtools sort #12

merged 6 commits into from
Oct 19, 2023

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kelly-sovacool
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@kelly-sovacool kelly-sovacool commented Oct 19, 2023 •
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Output bai index from samtools sort in bwa mem process

Issues

Resolves #8

PR Checklist

(Strikethrough any points that are not applicable.)

  • This comment contains a description of changes with justifications, with any relevant issues linked.
  • Write unit tests for any new features, bug fixes, or other code changes.
  • Update docs if there are any API changes.
  • Update CHANGELOG.md with a short description of any user-facing changes and reference the PR number. Guidelines: https://keepachangelog.com/en/1.1.0/

@kelly-sovacool kelly-sovacool merged commit 4d14377 into main Oct 19, 2023
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@kelly-sovacool kelly-sovacool deleted the sort-index branch October 19, 2023 17:56
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bwa mem to write index as well
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@kelly-sovacool