Name		Name	Last commit message	Last commit date
Latest commit History 198 Commits
CIVET-CC-mask.txt		CIVET-CC-mask.txt
CIVET_2.0_mask_left.txt		CIVET_2.0_mask_left.txt
CIVET_2.0_mask_left_short.txt		CIVET_2.0_mask_left_short.txt
CIVET_2.0_mask_right.txt		CIVET_2.0_mask_right.txt
CIVET_2.0_mask_right_short.txt		CIVET_2.0_mask_right_short.txt
LICENSE		LICENSE
MAGeT-QC.sh		MAGeT-QC.sh
MAGeT-object-QC.sh		MAGeT-object-QC.sh
README.md		README.md
affine_xfm_to_rigid.sh		affine_xfm_to_rigid.sh
antsRegistration-coregister-average-withN4.sh		antsRegistration-coregister-average-withN4.sh
antsRegistration-coregister-average.sh		antsRegistration-coregister-average.sh
antsRegistration_affine.sh		antsRegistration_affine.sh
antsRegistration_affine_SyN.sh		antsRegistration_affine_SyN.sh
ants_generate_iterations.py		ants_generate_iterations.py
ants_label_qc_image.sh		ants_label_qc_image.sh
autocrop+		autocrop+
bestlinreg_g		bestlinreg_g
bestlinreg_maget		bestlinreg_maget
clean_and_center_minc.pl		clean_and_center_minc.pl
collect_jacobian_volumes.sh		collect_jacobian_volumes.sh
collect_volumes.sh		collect_volumes.sh
create_civet_image.sh		create_civet_image.sh
deparcellate_civet_data.py		deparcellate_civet_data.py
intrasubject-N4_extract.sh		intrasubject-N4_extract.sh
iterativeN4.sh		iterativeN4.sh
iterativeN4_2.sh		iterativeN4_2.sh
iterativeN4_multispectral.sh		iterativeN4_multispectral.sh
labels_colors.map		labels_colors.map
make-t1t2-hybrid-image.sh		make-t1t2-hybrid-image.sh
mincmontage		mincmontage
mouse-preprocessing-v2.sh		mouse-preprocessing-v2.sh
mouse-preprocessing-v4.sh		mouse-preprocessing-v4.sh
mouse-preprocessing-v5.sh		mouse-preprocessing-v5.sh
mouse-preprocessing-v5_pv6_brkraw_nifti.sh		mouse-preprocessing-v5_pv6_brkraw_nifti.sh
mouse-preprocessing-v5_pv6_dicom.sh		mouse-preprocessing-v5_pv6_dicom.sh
mouse-preprocessing-v6_pv5_dicom.sh		mouse-preprocessing-v6_pv5_dicom.sh
mouse-preprocessing-v6_pv6_brkraw_nifti.sh		mouse-preprocessing-v6_pv6_brkraw_nifti.sh
mouse-preprocessing-v6_pv6_dicom.sh		mouse-preprocessing-v6_pv6_dicom.sh
mouse-preprocessing-v7_pv6_brkraw_nifti.sh		mouse-preprocessing-v7_pv6_brkraw_nifti.sh
mouse-preprocessing-v8_pv6_brkraw_nifti.sh		mouse-preprocessing-v8_pv6_brkraw_nifti.sh
neonate-preprocessing-v2.sh		neonate-preprocessing-v2.sh
neonate-preprocessing.sh		neonate-preprocessing.sh
pad_recrop_minc.sh		pad_recrop_minc.sh
parcellate_civet_data.py		parcellate_civet_data.py
preprocess_t2_with_t1_priors.sh		preprocess_t2_with_t1_priors.sh
rat-preprocessing-v2.sh		rat-preprocessing-v2.sh
rat-preprocessing-v3.sh		rat-preprocessing-v3.sh
rat-preprocessing-v7.sh		rat-preprocessing-v7.sh
rat-preprocessing.sh		rat-preprocessing.sh
smooth_downsample.sh		smooth_downsample.sh
t2-slab-preprocess.sh		t2-slab-preprocess.sh
t2star_fit.py		t2star_fit.py
t2star_fit_simpleitk.py		t2star_fit_simpleitk.py
xfm2det		xfm2det

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