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Merge remote-tracking branch 'origin/develop' into canegro-n
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@fabiooliveira72
fabiooliveira72 committed May 9, 2023
2 parents 6817229 + 8cbd624 commit f307efc
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2 changes: 1 addition & 1 deletion Data/DETAIL.CDE
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Expand Up @@ -253,7 +253,7 @@ CS Cassava IB
FA Fallow IB
FB Faba bean IB
GB Green bean IB
GG Guineagrass IB
GG Guinea grass IB
GY Guar IB
LT Lentil IB
ML Pearl millet IB
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2 changes: 1 addition & 1 deletion Data/Genotype/ALFRM048.CUL
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Expand Up @@ -35,7 +35,7 @@
AL0001 Aragon FD7 G00001 12.50 0.200 99.0 10.0 18.0 33.00 25.00 1.40 240. 2.0 0.01 0.020 15.0 2.05 20.0 78.0 .115 .035
AL0002 Rugged FD3 G00002 12.50 0.200 99.0 10.0 18.0 33.00 25.00 1.32 240. 2.0 0.01 0.020 15.0 2.05 20.0 78.0 .115 .035
AL0003 Cisco II FD6 G00003 12.50 0.200 99.0 10.0 18.0 33.00 25.00 1.38 240. 2.0 0.01 0.020 15.0 2.05 20.0 78.0 .115 .035
AL0004 CUF101 FD10 G00004 12.50 0.200 99.0 10.0 18.0 33.00 25.00 1.46 240. 2.0 0.01 0.020 15.0 2.05 20.0 78.0 .115 .035
AL0004 CUF101 FD9 G00004 12.50 0.200 99.0 10.0 18.0 33.00 25.00 1.46 240. 2.0 0.01 0.020 15.0 2.05 20.0 78.0 .115 .035
AL0005 Aragon RDRMM G00005 12.50 0.200 99.0 10.0 18.0 33.00 25.00 1.40 240. 2.0 0.01 0.020 15.0 2.05 20.0 78.0 .115 .035
CA0001 CFIA-alfalfa FD4 C00001 12.50 0.200 99.0 10.0 18.0 33.00 25.00 1.34 240. 2.0 0.01 0.020 15.0 2.05 20.0 78.0 .115 .035 !Experiment at CFIA
CA0002 Apica FD4 C00001 12.50 0.200 99.0 10.0 18.0 33.00 25.00 1.34 240. 2.0 0.01 0.020 15.0 2.05 20.0 78.0 .115 .035 !Experiment at Fredericton 1994-1996
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12 changes: 6 additions & 6 deletions Data/Genotype/ALFRM048.ECO
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Expand Up @@ -58,10 +58,10 @@
! so I kept RDRMT = 0.421)
@ECO# ECONAME.......... MG TM THVAR PL-EM EM-V1 V1-JU JU-R0 PM06 PM09 LNGSH R7-R8 FL-VS TRIFL RWDTH RHGHT R1PPO OPTBI SLOBI RDRMT RDRMG RDRMM RCHDP
! 1 2 3 4 5 6 7 8 9 10 11 12 13 17 18 19 20 21 22 23
G00001 Aragon FD7 00 01 1.00 0.0 0.0 0.0 9999. 0.0 0.75 10.0 9999. 9999. 0.24 1.0 1.0 .000 0.0 .000 0.421 1.000 0.850 1.000
G00002 Rugged FD3 00 01 1.00 0.0 0.0 0.0 9999. 0.0 0.75 10.0 9999. 9999. 0.24 1.0 1.0 .000 0.0 .000 0.500 1.000 0.850 1.000
G00001 Aragon FD7 00 01 1.00 0.0 0.0 0.0 9999. 0.0 0.75 10.0 9999. 9999. 0.25 1.0 1.0 .000 0.0 .000 0.421 1.000 0.850 1.000
G00002 Rugged FD3 00 01 1.00 0.0 0.0 0.0 9999. 0.0 0.75 10.0 9999. 9999. 0.21 1.0 1.0 .000 0.0 .000 0.500 1.000 0.850 1.000
G00003 Cisco II FD6 00 01 1.00 0.0 0.0 0.0 9999. 0.0 0.75 10.0 9999. 9999. 0.24 1.0 1.0 .000 0.0 .000 0.320 1.000 0.850 1.000
G00004 CUF101 FD10 00 01 1.00 0.0 0.0 0.0 9999. 0.0 0.75 10.0 9999. 9999. 0.24 1.0 1.0 .000 0.0 .000 0.140 1.000 0.850 1.000
G00005 Aragon 00 01 1.00 0.0 0.0 0.0 9999. 0.0 0.75 10.0 9999. 9999. 0.24 1.0 1.0 .000 0.0 .000 0.421 1.000 0.650 1.000
C00001 Apica FD4 00 01 1.00 0.0 0.0 0.0 9999. 0.0 0.75 10.0 9999. 9999. 0.20 1.0 1.0 .000 0.0 .000 0.421 1.000 0.950 1.000
C00002 Oneida FD3 00 01 1.00 0.0 0.0 0.0 9999. 0.0 0.75 10.0 9999. 9999. 0.20 1.0 1.0 .000 0.0 .000 0.500 1.000 0.950 1.000
G00004 CUF101 FD9 00 01 1.00 0.0 0.0 0.0 9999. 0.0 0.75 10.0 9999. 9999. 0.27 1.0 1.0 .000 0.0 .000 0.140 1.000 0.850 1.000
G00005 Aragon 00 01 1.00 0.0 0.0 0.0 9999. 0.0 0.75 10.0 9999. 9999. 0.25 1.0 1.0 .000 0.0 .000 0.421 1.000 0.650 1.000
C00001 Apica FD4 00 01 1.00 0.0 0.0 0.0 9999. 0.0 0.75 10.0 9999. 9999. 0.21 1.0 1.0 .000 0.0 .000 0.421 1.000 0.950 1.000
C00002 Oneida FD3 00 01 1.00 0.0 0.0 0.0 9999. 0.0 0.75 10.0 9999. 9999. 0.22 1.0 1.0 .000 0.0 .000 0.500 1.000 0.950 1.000
38 changes: 32 additions & 6 deletions Data/Genotype/ALFRM048.SPE
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Expand Up @@ -93,6 +93,7 @@
0.55 0.55 0.55 0.51 0.40 0.38 0.35 0.35 YLFEST VALUES - kjb new 8/15/19 AZ reduce root, incr stem
0.19 0.19 0.20 0.24 0.30 0.36 0.41 0.41 YSTEST VALUES - kjb new
0.08 0.08 0.08 0.09 0.10 0.11 0.11 0.11 YSREST VALUES - kjb new
! 40.0 SDLEST !photothermal days sowing to established perennial
60.0 SDLEST !photothermal days sowing to established perennial

!*LEAF GROWTH PARAMETERS
Expand All @@ -105,7 +106,8 @@


!*LEAF SENESCENCE FACTORS
0.80 0.20 .060 -2.0 -25.0 SENRTE,SENRT2,SENDAY,FREEZ1,FREEZ2 - Wafa/kjb
0.80 0.20 .060 -20.0 -25.0 SENRTE,SENRT2,SENDAY,FREEZ1,FREEZ2 - Wafa/kjb
! 0.80 0.20 .060 -2.0 -25.0 SENRTE,SENRT2,SENDAY,FREEZ1,FREEZ2 - Wafa/kjb
1.17 13.1 0.01 ICMP,TCMP(Light comp, time constant-senes),LFSEN (natural sen


Expand Down Expand Up @@ -170,19 +172,43 @@
0.35 0.35 0.35 1.00 1.00 YHWTEM(1-5),RELATIVE EXPAN - kjb 8/16/19
0.00 5.00 7.50 10.00 15.00 20.00 30.00 80.00 XHWPAR(1-8),PAR VALUES
4.00 2.00 1.50 1.25 1.05 1.00 1.00 1.00 YHWPAR(1-8),RELATIVE EXPAN
-11.1 FMOW, EFFECT OF HARV. FREQUENCY ON MOW

-11.1 FMOW, EFFECT OF HARV. FREQUENCY ON MOW
159.6 RHMOW, EFFECT OF STUBBLE HEIGHT ON MOW
50.0 CHMOW, EFFECT OF CANOPY HEIGHT ON MOW
-0.04 FLFP, EFFECT OF HARV. FREQ. ON RSPLF
-0.34 RHLFP, EFFECT OF GRAZING EFFICIENCY ON RSPLF
60.0 RSPLM, MAXIMUM ACHIEVABLE PERCENT LEAF OF STUBBLE

!*STUBBLE MASS AND PERCENT LEAF FORAGE HARVEST
!for alfalfa, kjb set MOWREF to 800 and RSREF to 20%, and all other factors (1.0) to best mimic Malik's experiment
!Note: 34 days is best fixed harvest and 630 GDD for best GDD harvest for Spanish data (also works for Arizona, unpublished)
800 20.0 MOWREF RSREF (2 VALUES) reference stuble mass (kg/ha) and harvest frequency in days
0 14 28 42 84 400 XFREQ (6 VALUES) harvest frequency in days
0 100 350 500 700 800 XFRGDD (6 VALUES) harvest frequency in GDD
1.0 1.0 1.0 1.0 1.0 1.0 YFREQ (6 VALUES) relative change on MOWREF
1.0 1.0 1.0 1.0 1.0 1.0 YRSREF (6 VALUES) relative change on RSREF

0 5 10 20 40 400 XCUTHT (6 VALUES) cutting height in cm
1.0 1.0 1.0 1.0 1.0 1.0 YCUTHT (6 VALUES) relative change on MOWREF
0 200 400 800 1000 1200 XCHMOW (6 VALUES) pre-harvest biomass kg/m2
1.0 1.0 1.0 1.0 1.0 1.0 YCHMOW (6 VALUES) relative change on MOWREF
! start with no effect of cutting height,days, or GDD on mowref,RSREF

! 600 10.0 MOWREF RSREF (2 VALUES) reference stuble mass (kg/ha) and harvest frequency in days
! 0 14 28 42 84 400 XFREQ (6 VALUES) harvest frequency in days
! 0 100 350 500 700 800 XFRGDD (6 VALUES) harvest frequency in GDD
! 1.1 1.1 1.0 0.9 0.9 0.9 YFREQ (6 VALUES) relative change on MOWREF
! 1.2 1.2 1.0 0.9 0.8 0.8 YRSREF (6 VALUES) relative change on RSREF

! 0 5 10 20 40 400 XCUTHT (6 VALUES) cutting height in cm
! 1.2 1.2 1.0 0.9 0.8 0.8 YCUTHT (6 VALUES) relative change on MOWREF
! 0 200 400 800 1000 1200 XCHMOW (6 VALUES) pre-harvest biomass kg/m2
! 1.0 1.0 1.5 2.0 2.5 3.0 YCHMOW (6 VALUES) relative change on MOWREF

!*EVAPOTRANSPIRATION
0.50 0.9 KEP, EORATIO
0.50 1.15 SSKC, SKCBmax ASCE short ref (12 cm grass)
0.50 1.00 TSKC, TKCBmax ASCE tall ref (50 cm alfalfa)


!*STORAGE ORGAN PARAMETERS -
1.000 0.000 STRSRFL, STRLYR1- Proportions of storage organ mass on soil surface and in soi
0.009 SENSR - rate for senescence of storage organ tissue
Expand All @@ -194,4 +220,4 @@
0.00 0.00 0.00 1.000 DRD FMPGD(4),TYPPGD-DAYLENGTH EFFECT ON PG, FNPGD(3)& FNPGD(4)are
-18.0 -25.0 0.050 HARD1, HARD2, FRZDC - freezing temperatures that will kill storage organ b (wafa)
-25.0 -25.0 -25.0 0.16 REV FRZHRD(4),TYPHRD-COLD HARDENING RESPONSE, start hardening at FR
-25.0 -25.0 -25.0 0.80 DHD FRZDHD(4),TYPDHD-COLD DEHARDENING RESPONSE, start dehardening a
-25.0 -25.0 -25.0 0.80 DHD FRZDHD(4),TYPDHD-COLD DEHARDENING RESPONSE, start dehardening a
3 changes: 2 additions & 1 deletion Data/Genotype/BNGRO048.CUL
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Expand Up @@ -52,7 +52,8 @@
990006 MesoAm Hab 2 & 3 . MESIND 12.17 0.000 31.0 3.5 10.0 22.00 21.00 1.00 320. 133.0 1.00 0.230 20.0 5.50 10.0 78.0 .235 .030
990007 Mex Highland H 3 . MEXHIL 12.17 0.050 27.0 3.0 9.0 22.00 20.00 1.00 320. 133.0 1.00 0.400 17.0 3.20 5.0 78.0 .235 .030

IB0001 Porrillo Sintetico . MESIND 13.50 0.017 31.5 3.0 8.0 20.50 21.00 1.00 300. 150.0 1.00 0.230 21.0 5.20 11.5 78.0 .235 .030
IB0001 Porrillo Sintetico . MESIND 13.50 0.017 31.2 3.0 8.0 20.50 21.00 1.00 300. 150.0 1.00 0.240 21.0 5.20 11.5 78.0 .235 .030
!IB0001 Porrillo Sintetico . MESIND 13.50 0.017 31.5 3.0 8.0 20.50 21.00 1.00 300. 150.0 1.00 0.230 21.0 5.20 11.5 78.0 .235 .030
IB0002 BAT 477 . MESIND 12.17 0.000 30.0 3.0 8.5 21.00 21.00 1.00 300. 140.0 1.00 0.230 21.0 5.50 11.5 78.0 .235 .030
IB0003 Seafarer . MESDET 12.17 0.000 28.0 4.0 11.0 19.00 18.00 0.95 315. 133.0 1.00 0.220 17.0 5.00 11.0 78.0 .235 .030
IB0004 C-20 . MESIND 12.17 0.000 33.6 4.5 11.5 21.50 20.00 0.97 310. 133.0 1.00 0.220 17.0 5.20 14.0 78.0 .235 .030
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21 changes: 14 additions & 7 deletions Data/Genotype/BNGRO048.ECO
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Expand Up @@ -43,10 +43,17 @@
!
@ECO# ECONAME.......... MG TM THVAR PL-EM EM-V1 V1-JU JU-R0 PM06 PM09 LNGSH R7-R8 FL-VS TRIFL RWDTH RHGHT R1PPO OPTBI SLOBI
! 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
MESIND MESO AMER T 2-4 01 01 0.00 3.0 3.0 0.0 5.0 0.0 0.55 8.0 9.0 11.00 0.35 1.0 1.0 .000 0.0 .000
MESDET MESO AMER TYPE 1 01 01 0.00 3.0 3.0 0.0 5.0 0.0 0.55 8.0 7.0 0.00 0.35 1.0 1.0 .000 0.0 .000
ANDIND ANDEAN TYPE 2-4 02 02 0.00 4.0 3.0 0.0 5.0 0.0 0.55 8.0 9.0 11.00 0.35 1.0 1.0 .000 0.0 .000
ANDDET ANDEAN TYPE 1 02 02 0.00 4.0 3.0 0.0 5.0 0.0 0.55 8.0 7.0 0.00 0.35 1.0 1.0 .000 0.0 .000
MEXHIL Mex Highland Ind 01 01 0.00 3.5 3.0 0.0 5.0 0.0 0.55 8.0 9.0 11.00 0.35 1.0 1.0 .000 0.0 .000
EMBRAP EMBRAPA 01 01 0.00 3.0 5.0 0.0 5.0 0.0 0.75 8.0 10.0 13.00 0.35 1.0 1.0 .000 0.0 .000
DFAULT DEFAULT ECOTYPE 01 01 1.00 4.0 5.0 0.0 5.0 0.0 0.50 8.0 10.0 13.00 0.35 1.0 1.0 .000 0.0 .000
MESIND MESO AMER T 2-4 01 01 0.00 2.4 3.0 0.0 5.0 0.0 0.55 8.0 9.0 11.00 0.34 1.0 1.0 .000 0.0 .000
MESDET MESO AMER TYPE 1 01 01 0.00 2.4 3.0 0.0 5.0 0.0 0.55 8.0 7.0 0.00 0.34 1.0 1.0 .000 0.0 .000
ANDIND ANDEAN TYPE 2-4 02 02 0.00 3.4 3.0 0.0 5.0 0.0 0.55 8.0 9.0 11.00 0.34 1.0 1.0 .000 0.0 .000
ANDDET ANDEAN TYPE 1 02 02 0.00 3.4 3.0 0.0 5.0 0.0 0.55 8.0 7.0 0.00 0.34 1.0 1.0 .000 0.0 .000
MEXHIL Mex Highland Ind 01 01 0.00 2.9 3.0 0.0 5.0 0.0 0.55 8.0 9.0 11.00 0.34 1.0 1.0 .000 0.0 .000
EMBRAP EMBRAPA 01 01 0.00 2.4 5.0 0.0 5.0 0.0 0.75 8.0 10.0 13.00 0.34 1.0 1.0 .000 0.0 .000
DFAULT DEFAULT ECOTYPE 01 01 1.00 3.4 5.0 0.0 5.0 0.0 0.50 8.0 10.0 13.00 0.34 1.0 1.0 .000 0.0 .000
!MESIND MESO AMER T 2-4 01 01 0.00 3.0 3.0 0.0 5.0 0.0 0.55 8.0 9.0 11.00 0.35 1.0 1.0 .000 0.0 .000
!MESDET MESO AMER TYPE 1 01 01 0.00 3.0 3.0 0.0 5.0 0.0 0.55 8.0 7.0 0.00 0.35 1.0 1.0 .000 0.0 .000
!ANDIND ANDEAN TYPE 2-4 02 02 0.00 4.0 3.0 0.0 5.0 0.0 0.55 8.0 9.0 11.00 0.35 1.0 1.0 .000 0.0 .000
!ANDDET ANDEAN TYPE 1 02 02 0.00 4.0 3.0 0.0 5.0 0.0 0.55 8.0 7.0 0.00 0.35 1.0 1.0 .000 0.0 .000
!MEXHIL Mex Highland Ind 01 01 0.00 3.5 3.0 0.0 5.0 0.0 0.55 8.0 9.0 11.00 0.35 1.0 1.0 .000 0.0 .000
!EMBRAP EMBRAPA 01 01 0.00 3.0 5.0 0.0 5.0 0.0 0.75 8.0 10.0 13.00 0.35 1.0 1.0 .000 0.0 .000
!DFAULT DEFAULT ECOTYPE 01 01 1.00 4.0 5.0 0.0 5.0 0.0 0.50 8.0 10.0 13.00 0.35 1.0 1.0 .000 0.0 .000
3 changes: 2 additions & 1 deletion Data/Genotype/BNGRO048.SPE
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Expand Up @@ -128,7 +128,8 @@
1.00 NHGT

!*EVAPOTRANSPIRATION
0.70 1.0 KEP, EORATIO
0.65 1.0 KEP, EORATIO
! 0.70 1.0 KEP, EORATIO
0.50 1.10 SSKC, SKCBmax ASCE short ref (12 cm grass)
0.50 0.95 TSKC, TKCBmax ASCE tall ref (50 cm alfalfa)

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2 changes: 0 additions & 2 deletions Data/Genotype/CHGRO048.CUL
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Expand Up @@ -58,8 +58,6 @@ IB0006 ICCC 42 v48calib . DFAULT 11.00 -.143 35.0 5.0 9.0 29.00 37.00 1
IB0007 ICCV 10 v48calib . DFAULT 11.00 -.143 35.0 5.0 10.0 28.00 36.00 1.010 200. 10.0 0.96 0.230 29.0 1.30 17.0 85.0 .216 .048
IB0008 ICCV 2 v48calib . DFAULT 11.00 -.143 26.5 5.0 9.0 27.00 35.00 1.010 200. 10.0 0.96 0.260 29.0 1.00 16.0 85.0 .216 .048
IB0009 ICCC 32 v48calib . DFAULT 11.00 -.143 40.0 5.0 11.5 29.00 37.00 0.980 150. 10.0 0.96 0.320 29.0 1.10 17.0 85.0 .216 .048


IB0010 ICCC 37 . DFAULT 11.00 -.143 38.5 6.0 11.0 39.00 46.00 1.000 160. 10.0 0.96 0.220 28.0 1.20 18.0 85.0 .216 .048
IB0012 KAK-2 . KABULE 11.00 -.143 40.0 10.0 15.0 35.00 42.00 1.000 200. 10.0 0.96 0.181 29.0 1.20 18.0 85.0 .216 .048
IB0013 JG 218 . JG 218 11.00 -.143 36.0 9.0 12.5 39.00 47.00 1.000 200. 10.0 0.96 0.180 29.0 1.50 18.0 85.0 .216 .048
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2 changes: 0 additions & 2 deletions Data/Genotype/CHGRO048.SPE
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@@ -1,7 +1,5 @@
*CHICKPEA SPECIES COEFFICIENTS: CRGRO048 MODEL

!NOTE: ORIGINAL VALUE OF PHTMAX WAS 75.00, CHNGED TO 54.00 FOR CANOPY PHOTOSYNTHESIS

!*PHOTOSYNTHESIS PARAMETERS
39.00 54.00 0.63 0.10 PARMAX,PHTMAX,KCAN, KC_SLOPE
!Note: Kcan can be overridden by value in Ecotype file, if present
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4 changes: 3 additions & 1 deletion Data/Genotype/CIGRO048.CUL
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Expand Up @@ -44,4 +44,6 @@
999991 MINIMA . DFAULT 14.10 0.001 20.0 4.0 13.0 17.00 28.00 1.500 300. 11.0 0.94 0.001 17.0 2.00 19.0 30.0 .210 .300
999992 MAXIMA . DFAULT 14.10 0.001 30.0 7.0 17.0 20.00 32.00 1.550 375. 17.0 0.98 0.002 21.0 2.50 25.0 45.0 .210 .410

CI0001 Geotype G8 . CI1111 14.10 0.001 25.0 6.0 14.2 19.20 32.00 1.530 360. 12.6 0.97 0.001 18.0 2.20 25.0 33.6 .210 .410 !kjb, re-calibrated August and 9/3/21
!CI0001 Geotype G8 . CI1111 14.10 0.001 25.0 6.0 15.2 18.20 28.00 1.530 340. 12.6 0.95 0.001 18.0 2.20 23.0 34.0 .210 .410 !generated for chia
!CI0001 Geotype G8 . CI1111 14.10 0.001 25.0 6.0 13.8 19.60 32.00 1.530 360. 12.6 0.97 0.001 18.0 2.20 25.0 32.0 .210 .410 !kjb, re-calibrated 2/14/22
CI0001 Geotype G8 . CI1111 14.10 0.001 25.0 6.0 13.4 20.00 32.00 1.530 360. 12.6 0.98 0.001 18.0 2.20 25.0 32.0 .210 .410 !kjb, re-calibrated 2/14/22
4 changes: 2 additions & 2 deletions Data/Genotype/CIGRO048.ECO
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Expand Up @@ -44,8 +44,8 @@
@ECO# ECONAME.......... MG TM THVAR PL-EM EM-V1 V1-JU JU-R0 PM06 PM09 LNGSH R7-R8 FL-VS TRIFL RWDTH RHGHT R1PPO OPTBI SLOBI
! 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16

CI1111 MATURITY GROUP 0 00 01 0.0 3.0 3.0 0.0 05.0 0.0 0.35 13.0 12.0 0.50 0.72 1.0 1.0 .000 18.0 .028
CI2222 MATURITY GROUP 0 00 01 0.0 3.0 3.0 0.0 05.0 0.0 0.35 10.0 12.0 0.50 0.72 1.0 1.0 .189 18.0 .028
CI1111 MATURITY GROUP 0 00 01 0.0 1.7 3.0 0.0 05.0 0.0 0.35 13.0 12.0 0.50 0.72 1.0 1.0 .000 18.0 .028
!CI1111 MATURITY GROUP 0 00 01 0.0 3.0 3.0 0.0 05.0 0.0 0.35 13.0 12.0 0.50 0.72 1.0 1.0 .000 18.0 .028
DFAULT DEFAULT 0 00 01 0.0 3.0 3.0 0.0 05.0 0.0 0.35 13.0 12.0 0.50 0.72 1.0 1.0 .000 18.0 .028

!
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