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390 Open 2,581 Closed
390 Open 2,581 Closed
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Issues list

succeeded.log should come from a temporary directory and not the working directory intern
#5086 opened Sep 11, 2024 by adamnovak
WDLArrayBindingsJob can use a lot of memory wdl
#5085 opened Sep 11, 2024 by adamnovak
Cache can have files go missing on UCSC Slurm cluster slurm
#5084 opened Sep 10, 2024 by adamnovak
Slurm jobs can stay running after toil kill bug slurm
#5082 opened Sep 10, 2024 by adamnovak
1
balance load over nodes
#5077 opened Aug 29, 2024 by macmanes
4
Slurm timeouts that happen during MiniWDL container runs are not detected as timeouts slurm wdl
#5073 opened Aug 21, 2024 by adamnovak
Report metrics to Dockstore
#5070 opened Aug 19, 2024 by unito-bot
2
Move s3 delete object to lib.
#5068 opened Aug 19, 2024 by DailyDreaming
@DailyDreaming
Move head bucket function to lib.
#5066 opened Aug 19, 2024 by DailyDreaming
@DailyDreaming
Slurm runs can get so big that we can't list all the job IDs on the sacct command line and crash
#5064 opened Aug 19, 2024 by adamnovak
Improper type coercion in WDL scatter with conditional
#5055 opened Aug 9, 2024 by stxue1
TRS Support
#5050 opened Aug 6, 2024 by DailyDreaming
Support loading a dockstore URL as a workflow that Toil can run
#5049 opened Aug 6, 2024 by DailyDreaming
@adamnovak
CachingFileStoreTestWithAwsJobStore.testReturnFileSizes fails with "Stats and logging thread has quit" on CI
#5040 opened Jul 26, 2024 by adamnovak
Symlink pasthrough on WDL is broken again
#5031 opened Jul 22, 2024 by adamnovak
1
1
S3, Add runImportsOnWorkers parameter to execute imports from Worker
#5025 opened Jul 19, 2024 by Guigzai
2
It's hard to figure out that a Slurm WDL workflow is failing because the default job store isn't on a shared filesystem wdl
#5007 opened Jul 3, 2024 by adamnovak
Detect non-optional files that are missing at arbitrary depth in WDL task outputs
#5006 opened Jul 2, 2024 by adamnovak
Support filename coercion back to string
#5004 opened Jul 2, 2024 by stxue1
1
1
Allow array of disk specifications for WDL
#4995 opened Jun 28, 2024 by stxue1
1
Allow WDL workflow inputs to depend on tasks in the workflow wdl
#4993 opened Jun 27, 2024 by adamnovak
@adamnovak
toil-wdl-runner does not handle string to file coercion properly for optional file types
#4992 opened Jun 27, 2024 by stxue1
1
Move/write list_multipart_uploads to its own library file and add a test.
#4987 opened Jun 24, 2024 by DailyDreaming
@DailyDreaming
Move/write head_s3_object to its own library file and add a test.
#4986 opened Jun 24, 2024 by DailyDreaming
@DailyDreaming
Move/write delete_iam_instance_profile to its own library file and add a test.
#4985 opened Jun 24, 2024 by DailyDreaming
@DailyDreaming
ProTip! Exclude everything labeled bug with -label:bug.