[BUG]: error: ‘TimingType’ was not declared in this scope #2645

carlosal1015 · 2023-05-07T15:31:16Z

How to reproduce the bug

Hi, I guess the problem arises in the newer GCC 13.

[  9%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/Table.cpp.o
In file included from /tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/common/MPI.h:16,
                 from /tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/common/MPI.cpp:7:
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/graph/AdjacencyList.h:172:14: warning: testing if a concept-id is a valid expression; add ‘requires’ to check satisfaction [-Wmissing-requires]
  172 |              std::convertible_to<
      |              ^
      |              requires 
In file included from /tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/common/MPI.h:16,
                 from /tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/common/IndexMap.h:11,
                 from /tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/common/IndexMap.cpp:7:
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/graph/AdjacencyList.h:172:14: warning: testing if a concept-id is a valid expression; add ‘requires’ to check satisfaction [-Wmissing-requires]
  172 |              std::convertible_to<
      |              ^
      |              requires 
In file included from /tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/common/MPI.h:16,
                 from /tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/common/Table.cpp:9:
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/graph/AdjacencyList.h:172:14: warning: testing if a concept-id is a valid expression; add ‘requires’ to check satisfaction [-Wmissing-requires]
  172 |              std::convertible_to<
      |              ^
      |              requires 
[ 11%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/Timer.cpp.o
In file included from /tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/common/TimeLogger.h:10,
                 from /tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/common/Timer.cpp:9:
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/common/timing.h:22:6: warning: elaborated-type-specifier for a scoped enum must not use the ‘class’ keyword
   22 | enum class TimingType : std::int32_t
      | ~~~~ ^~~~~
      |      -----
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/common/timing.h:22:12: error: use of enum ‘TimingType’ without previous declaration
   22 | enum class TimingType : std::int32_t
      |            ^~~~~~~~~~
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/common/timing.h:22:23: error: expected unqualified-id before ‘:’ token
   22 | enum class TimingType : std::int32_t
      |                       ^
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/common/timing.h:33:24: error: ‘TimingType’ was not declared in this scope
   33 | Table timings(std::set<TimingType> type);
      |                        ^~~~~~~~~~
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/common/timing.h:33:34: error: template argument 1 is invalid
   33 | Table timings(std::set<TimingType> type);
      |                                  ^
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/common/timing.h:33:34: error: template argument 2 is invalid
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/common/timing.h:33:34: error: template argument 3 is invalid
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/common/timing.h:41:43: error: ‘TimingType’ was not declared in this scope
   41 | void list_timings(MPI_Comm comm, std::set<TimingType> type,
      |                                           ^~~~~~~~~~
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/common/timing.h:41:53: error: template argument 1 is invalid
   41 | void list_timings(MPI_Comm comm, std::set<TimingType> type,
      |                                                     ^
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/common/timing.h:41:53: error: template argument 2 is invalid
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/common/timing.h:41:53: error: template argument 3 is invalid
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/common/TimeLogger.h:42:26: error: ‘TimingType’ was not declared in this scope
   42 |   Table timings(std::set<TimingType> type);
      |                          ^~~~~~~~~~
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/common/TimeLogger.h:42:36: error: template argument 1 is invalid
   42 |   Table timings(std::set<TimingType> type);
      |                                    ^
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/common/TimeLogger.h:42:36: error: template argument 2 is invalid
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/common/TimeLogger.h:42:36: error: template argument 3 is invalid
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/common/TimeLogger.h:42:17: error: ‘std::type’ has not been declared
   42 |   Table timings(std::set<TimingType> type);
      |                 ^~~
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/common/TimeLogger.h:49:45: error: ‘TimingType’ was not declared in this scope
   49 |   void list_timings(MPI_Comm comm, std::set<TimingType> type,
      |                                             ^~~~~~~~~~
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/common/TimeLogger.h:49:55: error: template argument 1 is invalid
   49 |   void list_timings(MPI_Comm comm, std::set<TimingType> type,
      |                                                       ^
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/common/TimeLogger.h:49:55: error: template argument 2 is invalid
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/common/TimeLogger.h:49:55: error: template argument 3 is invalid
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/common/TimeLogger.h:49:36: error: ‘std::type’ has not been declared
   49 |   void list_timings(MPI_Comm comm, std::set<TimingType> type,
      |                                    ^~~
make[2]: *** [dolfinx/CMakeFiles/dolfinx.dir/build.make:146: dolfinx/CMakeFiles/dolfinx.dir/common/Timer.cpp.o] Error 1
make[2]: *** Waiting for unfinished jobs....
make[1]: *** [CMakeFiles/Makefile2:304: dolfinx/CMakeFiles/dolfinx.dir/all] Error 2
make: *** [Makefile:136: all] Error 2

Minimal Example (Python)

No response

Output (Python)

No response

Version

0.6.0

DOLFINx git commit

No response

Installation

From the source (script).

Additional information

OS: Arch Linux
Toolchain: GNU Compiler Collection 13.1.1
boost version 1.81.0
petsc version 3.19.1
ffcx version 0.6.0
cmake version 3.26.3

The text was updated successfully, but these errors were encountered:

garth-wells · 2023-05-07T15:46:24Z

I think the first error was fixed in the dev version by #2513, and I've created a new PR (#2646) that hopefully fixes the second error (on TimingType).

Could you test the dev version once #2646 is merged?

carlosal1015 · 2023-05-07T16:12:51Z

Thanks, the first error is fixed.

==> Retrieving sources...
  -> Downloading dolfinx-0.6.0.tar.gz...
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100  668k    0  668k    0     0  1698k      0 --:--:-- --:--:-- --:--:-- 5553k
  -> Downloading requires-fix.patch...
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100  5658    0  5658    0     0  19330      0 --:--:-- --:--:-- --:--:-- 19330
  -> Downloading enum-fix.patch...
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100   739    0   739    0     0   3126      0 --:--:-- --:--:-- --:--:--  3126
==> Validating source files with sha512sums...
    dolfinx-0.6.0.tar.gz ... Passed
    requires-fix.patch ... Passed
    enum-fix.patch ... Passed
==> Removing existing $srcdir/ directory...
==> Extracting sources...
  -> Extracting dolfinx-0.6.0.tar.gz with bsdtar
==> Starting prepare()...
patching file cpp/dolfinx/fem/utils.h
patching file cpp/dolfinx/graph/AdjacencyList.h
patching file cpp/dolfinx/fem/utils.h
patching file cpp/dolfinx/common/timing.h
==> Starting build()...
-- The C compiler identification is GNU 13.1.1
-- The CXX compiler identification is GNU 13.1.1
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/sbin/gcc - skipped
-- Detecting C compile features
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-- Detecting CXX compiler ABI info
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-- Check for working CXX compiler: /usr/sbin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found MPI_C: /usr/lib/libmpi.so (found suitable version "3.1", minimum required is "3") 
-- Found MPI_CXX: /usr/lib/libmpi_cxx.so (found suitable version "3.1", minimum required is "3") 
-- Found MPI: TRUE (found suitable version "3.1", minimum required is "3")  
-- Performing Test HAVE_PIPE
-- Performing Test HAVE_PIPE - Success
-- Performing Test HAVE_PEDANTIC
-- Performing Test HAVE_PEDANTIC - Success
-- Performing Test HAVE_DEBUG
-- Performing Test HAVE_DEBUG - Success
-- Performing Test HAVE_O2_OPTIMISATION
-- Performing Test HAVE_O2_OPTIMISATION - Success
-- Found Boost 1.81.0 at /usr/lib/cmake/Boost-1.81.0
--   Requested configuration: QUIET REQUIRED COMPONENTS timer
-- Found boost_headers 1.81.0 at /usr/lib/cmake/boost_headers-1.81.0
-- Found boost_timer 1.81.0 at /usr/lib/cmake/boost_timer-1.81.0
--   [x] libboost_timer.so.1.81.0
--   [ ] libboost_timer.a
-- Adding boost_timer dependencies: chrono;headers
-- Found boost_chrono 1.81.0 at /usr/lib/cmake/boost_chrono-1.81.0
--   [x] libboost_chrono.so.1.81.0
--   [ ] libboost_chrono.a
-- Adding boost_chrono dependencies: headers
-- Found Boost: /usr/lib/cmake/Boost-1.81.0/BoostConfig.cmake (found suitable version "1.81.0", minimum required is "1.70") found components: timer 
-- Found Python3: /usr/sbin/python3.11 (found version "3.11.3") found components: Interpreter 
-- Adding /usr/lib/python3.11/site-packages/basix to Basix search hints
-- Found PkgConfig: /usr/sbin/pkg-config (found version "1.8.1") 
-- Checking for one of the modules 'PETSc>=3.15;petsc>=3.15'
-- Looking for PETSC_USE_COMPLEX
-- Looking for PETSC_USE_COMPLEX - not found
-- Found PETSc version 3.19.1, prefix: /opt/petsc/linux-c-opt
-- HDF5: Using hdf5 compiler wrapper to determine C configuration
-- Found HDF5: /usr/lib/libhdf5.so;/usr/lib/libsz.so;/usr/lib/libz.so;/usr/lib/libdl.a;/usr/lib/libm.so (found version "1.14.0") found components: C 
-- HDF5_DIR: HDF5_DIR-NOTFOUND
-- HDF5_DEFINITIONS: 
-- HDF5_INCLUDE_DIRS: /usr/include
-- HDF5_LIBRARIES: /usr/lib/libhdf5.so;/usr/lib/libsz.so;/usr/lib/libz.so;/usr/lib/libdl.a;/usr/lib/libm.so
-- HDF5_HL_LIBRARIES: 
-- HDF5_C_DEFINITIONS: 
-- HDF5_C_INCLUDE_DIR: 
-- HDF5_C_INCLUDE_DIRS: /usr/include
-- HDF5_C_LIBRARY: 
-- HDF5_C_LIBRARIES: /usr/lib/libhdf5.so;/usr/lib/libsz.so;/usr/lib/libz.so;/usr/lib/libdl.a;/usr/lib/libm.so
-- HDF5_C_HL_LIBRARY: 
-- HDF5_C_HL_LIBRARIES: 
-- Defined targets (if any):
-- ... hdf5::hdf5
-- Asking Python module FFCx for location of UFC... (Python executable: /usr/sbin/python3.11)
-- Found UFCx: /usr/lib/python3.11/site-packages/ffcx/codegeneration (found suitable version "0.6.0", minimum required is "0.6") 
CMake Warning at CMakeLists.txt:273 (find_package):
  By not providing "FindADIOS2.cmake" in CMAKE_MODULE_PATH this project has
  asked CMake to find a package configuration file provided by "ADIOS2", but
  CMake did not find one.
  Could not find a package configuration file provided by "ADIOS2" (requested
  version 2.8.1) with any of the following names:
    ADIOS2Config.cmake
    adios2-config.cmake
  Add the installation prefix of "ADIOS2" to CMAKE_PREFIX_PATH or set
  "ADIOS2_DIR" to a directory containing one of the above files.  If "ADIOS2"
  provides a separate development package or SDK, be sure it has been
  installed.
-- Checking for one of the modules 'slepc>=3.15'
-- Checking for package 'SCOTCH-PT'
-- SCOTCH could not be found. Be sure to set SCOTCH_ROOT. (missing: SCOTCH_LIBRARIES SCOTCH_INCLUDE_DIRS SCOTCH_TEST_RUNS) 
-- Performing Test PARMETIS_TEST_RUNS
-- Performing Test PARMETIS_TEST_RUNS - Success
-- Found ParMETIS: /lib/libparmetis.so;/lib/libmetis.so (Required is at least version "4.0.2") 
-- Checking for package 'KaHIP'
-- KaHIP could not be found/configured. (missing: KAHIP_INCLUDE_DIRS KAHIP_LIBRARIES KAHIP_TEST_RUNS) 
-- The following features have been enabled:
 * BUILD_SHARED_LIBS, Build DOLFINx with shared libraries.
 * CMAKE_INSTALL_RPATH_USE_LINK_PATH, Add paths to linker search and installed rpath.
 * DOLFINX_UFCX_PYTHON, Enable UFCx discovery using Python. Disable if UFCx should be found using a CMake config file.
-- The following RECOMMENDED packages have been found:
 * ParMETIS (required version >= 4.0.2), Parallel Graph Partitioning and Fill-reducing Matrix Ordering, <http://glaros.dtc.umn.edu/gkhome/metis/parmetis/overview>
   Parallel graph partitioning
-- The following REQUIRED packages have been found:
 * MPI (required version >= 3)
 * pugixml
 * boost_chrono (required version == 1.81.0)
 * boost_headers (required version == 1.81.0)
 * boost_timer (required version == 1.81.0)
 * Boost (required version >= 1.70), Boost C++ libraries, <http://www.boost.org>
 * Basix (required version >= 0.6)
 * PETSc, Portable, Extensible Toolkit for Scientific Computation (PETSc), <https://www.mcs.anl.gov/petsc/>
   PETSc linear algebra backend
 * HDF5, Hierarchical Data Format 5 (HDF5), <https://www.hdfgroup.org/HDF5>
 * Python3
 * UFCx (required version >= 0.6), Interface for form-compilers (part of FFCx), <https://github.com/fenics/ffcx>
 * PkgConfig
-- The following features have been disabled:
 * DOLFINX_SKIP_BUILD_TESTS, Skip build tests for testing usability of dependency packages.
-- The following OPTIONAL packages have not been found:
 * ADIOS2 (required version >= 2.8.1), Adaptable Input/Output (I/O) System., <https://adios2.readthedocs.io/en/latest/>
   IO, including in parallel
 * SCOTCH, Programs and libraries for graph, mesh and hypergraph partitioning, <https://www.labri.fr/perso/pelegrin/scotch>
   Parallel graph partitioning
 * KaHIP, A family of graph partitioning programs, <https://kahip.github.io/>
   Parallel graph partitioning
-- The following RECOMMENDED packages have not been found:
 * SLEPc, Scalable Library for Eigenvalue Problem Computations, <http://slepc.upv.es/>
   Eigenvalue computation
-- 
-- Copying demo and test data to build directory.
-- ----------------------------------------------
-- Configuring done (7.2s)
-- Generating done (0.0s)
-- Build files have been written to: /tmp/makepkg/dolfinx/src/build
[  7%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/defines.cpp.o
[  7%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/IndexMap.cpp.o
[  7%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/log.cpp.o
[  7%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/MPI.cpp.o
[  9%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/Table.cpp.o
[ 11%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/Timer.cpp.o
[ 13%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/TimeLogger.cpp.o
[ 15%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/TimeLogManager.cpp.o
[ 17%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/timing.cpp.o
[ 19%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/DirichletBC.cpp.o
[ 21%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/CoordinateElement.cpp.o
[ 23%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/DofMap.cpp.o
[ 25%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/ElementDofLayout.cpp.o
[ 26%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/FiniteElement.cpp.o
[ 28%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/FunctionSpace.cpp.o
[ 30%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/dofmapbuilder.cpp.o
[ 32%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/interpolate.cpp.o
[ 34%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/petsc.cpp.o
[ 36%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/sparsitybuild.cpp.o
In file included from /usr/include/c++/13.1.1/x86_64-pc-linux-gnu/bits/c++allocator.h:33,
                 from /usr/include/c++/13.1.1/bits/allocator.h:46,
                 from /usr/include/c++/13.1.1/bits/alloc_traits.h:39,
                 from /usr/include/c++/13.1.1/ext/alloc_traits.h:34,
                 from /usr/include/c++/13.1.1/bits/hashtable_policy.h:39,
                 from /usr/include/c++/13.1.1/bits/hashtable.h:35,
                 from /usr/include/c++/13.1.1/bits/unordered_map.h:33,
                 from /usr/include/c++/13.1.1/unordered_map:41,
                 from /usr/include/c++/13.1.1/functional:63,
                 from /tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/fem/dofmapbuilder.h:10,
                 from /tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/fem/dofmapbuilder.cpp:7:
In member function ‘void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = int]’,
    inlined from ‘constexpr void std::allocator< <template-parameter-1-1> >::deallocate(_Tp*, std::size_t) [with _Tp = int]’ at /usr/include/c++/13.1.1/bits/allocator.h:210:35,
    inlined from ‘static constexpr void std::allocator_traits<std::allocator<_Up> >::deallocate(allocator_type&, pointer, size_type) [with _Tp = int]’ at /usr/include/c++/13.1.1/bits/alloc_traits.h:516:23,
    inlined from ‘constexpr void std::_Vector_base<_Tp, _Alloc>::_M_deallocate(pointer, std::size_t) [with _Tp = int; _Alloc = std::allocator<int>]’ at /usr/include/c++/13.1.1/bits/stl_vector.h:387:19,
    inlined from ‘constexpr void std::vector<_Tp, _Alloc>::reserve(size_type) [with _Tp = int; _Alloc = std::allocator<int>]’ at /usr/include/c++/13.1.1/bits/vector.tcc:93:17,
    inlined from ‘std::pair<std::vector<long int>, std::vector<int> > {anonymous}::get_global_indices(const dolfinx::mesh::Topology&, int32_t, int64_t, const std::vector<long int>&, const std::vector<int>&, const std::vector<std::pair<signed char, int> >&)’ at /tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/fem/dofmapbuilder.cpp:481:24,
    inlined from ‘std::tuple<dolfinx::common::IndexMap, int, dolfinx::graph::AdjacencyList<int> > dolfinx::fem::build_dofmap_data(MPI_Comm, const dolfinx::mesh::Topology&, const ElementDofLayout&, const std::function<std::vector<int>(const dolfinx::graph::AdjacencyList<int>&)>&)’ at /tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/fem/dofmapbuilder.cpp:607:51:
/usr/include/c++/13.1.1/bits/new_allocator.h:168:33: warning: ‘void operator delete(void*, std::size_t)’ called on pointer ‘<unknown>’ with nonzero offset [4, 9223372036854775804] [-Wfree-nonheap-object]
  168 |         _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n));
      |                                 ^
In member function ‘_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = int]’,
    inlined from ‘constexpr _Tp* std::allocator< <template-parameter-1-1> >::allocate(std::size_t) [with _Tp = int]’ at /usr/include/c++/13.1.1/bits/allocator.h:198:40,
    inlined from ‘static constexpr _Tp* std::allocator_traits<std::allocator<_Up> >::allocate(allocator_type&, size_type) [with _Tp = int]’ at /usr/include/c++/13.1.1/bits/alloc_traits.h:482:28,
    inlined from ‘constexpr std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = int; _Alloc = std::allocator<int>]’ at /usr/include/c++/13.1.1/bits/stl_vector.h:378:33,
    inlined from ‘constexpr std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = int; _Alloc = std::allocator<int>]’ at /usr/include/c++/13.1.1/bits/stl_vector.h:375:7,
    inlined from ‘constexpr void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = int; _Alloc = std::allocator<int>]’ at /usr/include/c++/13.1.1/bits/stl_vector.h:395:44,
    inlined from ‘constexpr std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = int; _Alloc = std::allocator<int>]’ at /usr/include/c++/13.1.1/bits/stl_vector.h:332:26,
    inlined from ‘constexpr std::vector<_Tp, _Alloc>::vector(size_type, const allocator_type&) [with _Tp = int; _Alloc = std::allocator<int>]’ at /usr/include/c++/13.1.1/bits/stl_vector.h:554:47,
    inlined from ‘std::pair<std::vector<long int>, std::vector<int> > {anonymous}::get_global_indices(const dolfinx::mesh::Topology&, int32_t, int64_t, const std::vector<long int>&, const std::vector<int>&, const std::vector<std::pair<signed char, int> >&)’ at /tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/fem/dofmapbuilder.cpp:480:44,
    inlined from ‘std::tuple<dolfinx::common::IndexMap, int, dolfinx::graph::AdjacencyList<int> > dolfinx::fem::build_dofmap_data(MPI_Comm, const dolfinx::mesh::Topology&, const ElementDofLayout&, const std::function<std::vector<int>(const dolfinx::graph::AdjacencyList<int>&)>&)’ at /tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/fem/dofmapbuilder.cpp:607:51:
/usr/include/c++/13.1.1/bits/new_allocator.h:147:55: note: returned from ‘void* operator new(std::size_t)’
  147 |         return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp)));
      |                                                       ^
[ 38%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/utils.cpp.o
[ 40%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/geometry/BoundingBoxTree.cpp.o
[ 42%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/geometry/gjk.cpp.o
[ 44%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/geometry/utils.cpp.o
[ 46%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/graph/ordering.cpp.o
[ 48%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/graph/partitioners.cpp.o
[ 50%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/graph/partition.cpp.o
[ 51%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/ADIOS2Writers.cpp.o
[ 53%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/cells.cpp.o
[ 55%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/HDF5Interface.cpp.o
[ 57%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/VTKFile.cpp.o
[ 59%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/vtk_utils.cpp.o
[ 61%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/XDMFFile.cpp.o
[ 63%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/xdmf_function.cpp.o
[ 65%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/xdmf_mesh.cpp.o
[ 67%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/xdmf_utils.cpp.o
[ 69%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/la/SparsityPattern.cpp.o
[ 71%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/la/petsc.cpp.o
[ 73%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/la/slepc.cpp.o
[ 75%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/mesh/Mesh.cpp.o
[ 76%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/mesh/Geometry.cpp.o
[ 78%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/mesh/Topology.cpp.o
[ 80%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/mesh/cell_types.cpp.o
[ 82%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/mesh/generation.cpp.o
In file included from /tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/mesh/cell_types.h:11,
                 from /tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/mesh/cell_types.cpp:7:
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/graph/AdjacencyList.h:32:37: error: ‘int32_t’ in namespace ‘std’ does not name a type
   32 |   explicit AdjacencyList(const std::int32_t n) : _array(n), _offsets(n + 1)
      |                                     ^~~~~~~
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/graph/AdjacencyList.h:43:50: error: ‘int32_t’ is not a member of ‘std’; did you mean ‘int32_t’?
   43 |             std::convertible_to<std::vector<std::int32_t>> V>
      |                                                  ^~~~~~~
In file included from /usr/include/sys/types.h:155,
                 from /usr/include/stdlib.h:395,
                 from /usr/include/c++/13.1.1/cstdlib:79,
                 from /usr/include/c++/13.1.1/ext/string_conversions.h:43,
                 from /usr/include/c++/13.1.1/bits/basic_string.h:4110,
                 from /usr/include/c++/13.1.1/string:54,
                 from /usr/include/c++/13.1.1/bits/locale_classes.h:40,
                 from /usr/include/c++/13.1.1/bits/ios_base.h:41,
                 from /usr/include/c++/13.1.1/ios:44,
                 from /usr/include/c++/13.1.1/istream:40,
                 from /usr/include/c++/13.1.1/sstream:40,
                 from /tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/graph/AdjacencyList.h:13:
/usr/include/bits/stdint-intn.h:26:19: note: ‘int32_t’ declared here
   26 | typedef __int32_t int32_t;
      |                   ^~~~~~~
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/graph/AdjacencyList.h:43:50: error: template argument 1 is invalid
   43 |             std::convertible_to<std::vector<std::int32_t>> V>
      |                                                  ^~~~~~~
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/graph/AdjacencyList.h:43:50: error: template argument 2 is invalid
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/graph/AdjacencyList.h:43:18: error: expected identifier
   43 |             std::convertible_to<std::vector<std::int32_t>> V>
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/graph/AdjacencyList.h:43:18: error: wrong number of template arguments (1, should be 2)
In file included from /usr/include/c++/13.1.1/compare:37,
                 from /usr/include/c++/13.1.1/array:38,
                 from /tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/mesh/cell_types.h:9:
/usr/include/c++/13.1.1/concepts:72:13: note: provided for ‘template<class _From, class _To> concept std::convertible_to’
   72 |     concept convertible_to = is_convertible_v<_From, _To>
      |             ^~~~~~~~~~~~~~
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/graph/AdjacencyList.h:43:60: error: expected unqualified-id before ‘V’
   43 |             std::convertible_to<std::vector<std::int32_t>> V>
      |                                                            ^
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/graph/AdjacencyList.h:43:60: error: expected ‘>’ before ‘V’
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/graph/AdjacencyList.h:44:27: error: ‘V’ has not been declared
   44 |   AdjacencyList(U&& data, V&& offsets)
      |                           ^
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/graph/AdjacencyList.h:94:8: error: ‘int32_t’ in namespace ‘std’ does not name a type
   94 |   std::int32_t num_nodes() const { return _offsets.size() - 1; }
      |        ^~~~~~~
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/graph/AdjacencyList.h:132:26: error: ‘int32_t’ is not a member of ‘std’; did you mean ‘int32_t’?
  132 |   const std::vector<std::int32_t>& offsets() const { return _offsets; }
      |                          ^~~~~~~
/usr/include/bits/stdint-intn.h:26:19: note: ‘int32_t’ declared here
   26 | typedef __int32_t int32_t;
      |                   ^~~~~~~
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/graph/AdjacencyList.h:132:33: error: template argument 1 is invalid
  132 |   const std::vector<std::int32_t>& offsets() const { return _offsets; }
      |                                 ^
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/graph/AdjacencyList.h:132:33: error: template argument 2 is invalid
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/graph/AdjacencyList.h:132:14: error: ‘<expression error>’ in namespace ‘std’ does not name a type
  132 |   const std::vector<std::int32_t>& offsets() const { return _offsets; }
      |              ^~~~~~~~~~~~~~~~~~~~
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/graph/AdjacencyList.h:135:20: error: ‘int32_t’ is not a member of ‘std’; did you mean ‘int32_t’?
  135 |   std::vector<std::int32_t>& offsets() { return _offsets; }
      |                    ^~~~~~~
/usr/include/bits/stdint-intn.h:26:19: note: ‘int32_t’ declared here
   26 | typedef __int32_t int32_t;
      |                   ^~~~~~~
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/graph/AdjacencyList.h:135:27: error: template argument 1 is invalid
  135 |   std::vector<std::int32_t>& offsets() { return _offsets; }
      |                           ^
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/graph/AdjacencyList.h:135:27: error: template argument 2 is invalid
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/graph/AdjacencyList.h:135:8: error: ‘<expression error>’ in namespace ‘std’ does not name a type
  135 |   std::vector<std::int32_t>& offsets() { return _offsets; }
      |        ^~~~~~~~~~~~~~~~~~~~
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/graph/AdjacencyList.h:159:20: error: ‘int32_t’ is not a member of ‘std’; did you mean ‘int32_t’?
  159 |   std::vector<std::int32_t> _offsets;
      |                    ^~~~~~~
/usr/include/bits/stdint-intn.h:26:19: note: ‘int32_t’ declared here
   26 | typedef __int32_t int32_t;
      |                   ^~~~~~~
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/graph/AdjacencyList.h:159:27: error: template argument 1 is invalid
  159 |   std::vector<std::int32_t> _offsets;
      |                           ^
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/graph/AdjacencyList.h:159:27: error: template argument 2 is invalid
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/graph/AdjacencyList.h:159:8: error: ‘<expression error>’ in namespace ‘std’ does not name a type
  159 |   std::vector<std::int32_t> _offsets;
      |        ^~~~~~~~~~~~~~~~~~~~
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/graph/AdjacencyList.h: In constructor ‘dolfinx::graph::AdjacencyList<T>::AdjacencyList(int)’:
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/graph/AdjacencyList.h:32:61: error: class ‘dolfinx::graph::AdjacencyList<T>’ does not have any field named ‘_offsets’
   32 |   explicit AdjacencyList(const std::int32_t n) : _array(n), _offsets(n + 1)
      |                                                             ^~~~~~~~
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/graph/AdjacencyList.h:35:15: error: ‘_offsets’ was not declared in this scope
   35 |     std::iota(_offsets.begin(), _offsets.end(), 0);
      |               ^~~~~~~~
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/graph/AdjacencyList.h: In constructor ‘dolfinx::graph::AdjacencyList<T>::AdjacencyList(U&&, int&&)’:
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/graph/AdjacencyList.h:45:40: error: class ‘dolfinx::graph::AdjacencyList<T>’ does not have any field named ‘_offsets’
   45 |       : _array(std::forward<U>(data)), _offsets(std::forward<V>(offsets))
      |                                        ^~~~~~~~
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/graph/AdjacencyList.h:45:62: error: ‘V’ was not declared in this scope
   45 |       : _array(std::forward<U>(data)), _offsets(std::forward<V>(offsets))
      |                                                              ^
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/graph/AdjacencyList.h:47:20: error: ‘_offsets’ was not declared in this scope; did you mean ‘offsets’?
   47 |     _array.reserve(_offsets.back());
      |                    ^~~~~~~~
      |                    offsets
In file included from /usr/include/c++/13.1.1/cassert:44,
                 from /tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/graph/AdjacencyList.h:9:
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/graph/AdjacencyList.h:48:37: error: ‘int32_t’ is not a member of ‘std’; did you mean ‘int32_t’?
   48 |     assert(_offsets.back() == (std::int32_t)_array.size());
      |                                     ^~~~~~~
/usr/include/bits/stdint-intn.h:26:19: note: ‘int32_t’ declared here
   26 | typedef __int32_t int32_t;
      |                   ^~~~~~~
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/graph/AdjacencyList.h:48:45: error: expected ‘)’ before ‘_array’
   48 |     assert(_offsets.back() == (std::int32_t)_array.size());
      |                                             ^~~~~~
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/graph/AdjacencyList.h:48:45: error: expected ‘)’ before ‘_array’
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/graph/AdjacencyList.h:48:5: note: to match this ‘(’
   48 |     assert(_offsets.back() == (std::int32_t)_array.size());
      |     ^~~~~~
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/graph/AdjacencyList.h: In constructor ‘dolfinx::graph::AdjacencyList<T>::AdjacencyList(const std::vector<X>&)’:
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/graph/AdjacencyList.h:60:5: error: ‘_offsets’ was not declared in this scope
   60 |     _offsets.reserve(data.size() + 1);
      |     ^~~~~~~~
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/graph/AdjacencyList.h: In member function ‘int dolfinx::graph::AdjacencyList<T>::num_links(int) const’:
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/graph/AdjacencyList.h:101:30: error: ‘_offsets’ was not declared in this scope
  101 |     assert((node + 1) < (int)_offsets.size());
      |                              ^~~~~~~~
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/graph/AdjacencyList.h: In member function ‘std::span<_Type, 1844674[407](https://gitlab.com/dune-archiso/testing/aur/aur/-/jobs/4240481630#L407)37095[516](https://gitlab.com/dune-archiso/testing/aur/aur/-/jobs/4240481630#L516)15> dolfinx::graph::AdjacencyList<T>::links(int)’:
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/graph/AdjacencyList.h:111:41: error: ‘_offsets’ was not declared in this scope
  111 |     return std::span<T>(_array.data() + _offsets[node],
      |                                         ^~~~~~~~
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/graph/AdjacencyList.h: In member function ‘std::span<const T> dolfinx::graph::AdjacencyList<T>::links(int) const’:
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/graph/AdjacencyList.h:121:47: error: ‘_offsets’ was not declared in this scope
  121 |     return std::span<const T>(_array.data() + _offsets[node],
      |                                               ^~~~~~~~
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/graph/AdjacencyList.h: In member function ‘std::string dolfinx::graph::AdjacencyList<T>::str() const’:
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/graph/AdjacencyList.h:144:33: error: ‘_offsets’ was not declared in this scope
  144 |     for (std::size_t e = 0; e < _offsets.size() - 1; ++e)
      |                                 ^~~~~~~~
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/graph/AdjacencyList.h: In function ‘dolfinx::graph::AdjacencyList<typename std::decay<_Tp>::type::value_type> dolfinx::graph::regular_adjacency_list(U&&, int)’:
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/graph/AdjacencyList.h:190:8: error: ‘int32_t’ is not a member of ‘std’; did you mean ‘int32_t’?
  190 |   std::int32_t num_nodes = degree == 0 ? data.size() : data.size() / degree;
      |        ^~~~~~~
/usr/include/bits/stdint-intn.h:26:19: note: ‘int32_t’ declared here
   26 | typedef __int32_t int32_t;
      |                   ^~~~~~~
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/graph/AdjacencyList.h:191:20: error: ‘int32_t’ is not a member of ‘std’; did you mean ‘int32_t’?
  191 |   std::vector<std::int32_t> offsets(num_nodes + 1, 0);
      |                    ^~~~~~~
/usr/include/bits/stdint-intn.h:26:19: note: ‘int32_t’ declared here
   26 | typedef __int32_t int32_t;
      |                   ^~~~~~~
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/graph/AdjacencyList.h:191:27: error: template argument 1 is invalid
  191 |   std::vector<std::int32_t> offsets(num_nodes + 1, 0);
      |                           ^
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/graph/AdjacencyList.h:191:27: error: template argument 2 is invalid
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/graph/AdjacencyList.h:191:37: error: ‘num_nodes’ was not declared in this scope
  191 |   std::vector<std::int32_t> offsets(num_nodes + 1, 0);
      |                                     ^~~~~~~~~
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/graph/AdjacencyList.h:191:53: error: expression list treated as compound expression in initializer [-fpermissive]
  191 |   std::vector<std::int32_t> offsets(num_nodes + 1, 0);
      |                                                     ^
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/graph/AdjacencyList.h:192:39: error: request for member ‘size’ in ‘offsets’, which is of non-class type ‘int’
  192 |   for (std::size_t i = 1; i < offsets.size(); ++i)
      |                                       ^~~~
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/graph/AdjacencyList.h:193:12: error: invalid types ‘int[std::size_t {aka long unsigned int}]’ for array subscript
  193 |     offsets[i] = offsets[i - 1] + degree;
      |            ^
/tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/graph/AdjacencyList.h:193:25: error: invalid types ‘int[std::size_t {aka long unsigned int}]’ for array subscript
  193 |     offsets[i] = offsets[i - 1] + degree;
      |                         ^
make[2]: *** Waiting for unfinished jobs....
make[1]: *** [CMakeFiles/Makefile2:304: dolfinx/CMakeFiles/dolfinx.dir/all] Error 2
make: *** [Makefile:136: all] Error 2

chrisrichardson · 2023-05-07T16:17:03Z

I think this is due to missing

#include <cstdint>

from a few files

chrisrichardson · 2023-05-07T16:17:40Z

Looks like AdjacencyList.h and xdmf_mesh.h need it

carlosal1015 · 2023-05-07T16:24:23Z

Thanks 👍🏼 for the hint, it is fixed now as the same with basix.

-- Configuring done (6.7s)
-- Generating done (0.0s)
-- Build files have been written to: /tmp/makepkg/dolfinx/src/build
[  1%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/defines.cpp.o
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[ 26%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/FiniteElement.cpp.o
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In file included from /usr/include/c++/13.1.1/x86_64-pc-linux-gnu/bits/c++allocator.h:33,
                 from /usr/include/c++/13.1.1/bits/allocator.h:46,
                 from /usr/include/c++/13.1.1/bits/alloc_traits.h:39,
                 from /usr/include/c++/13.1.1/ext/alloc_traits.h:34,
                 from /usr/include/c++/13.1.1/bits/hashtable_policy.h:39,
                 from /usr/include/c++/13.1.1/bits/hashtable.h:35,
                 from /usr/include/c++/13.1.1/bits/unordered_map.h:33,
                 from /usr/include/c++/13.1.1/unordered_map:41,
                 from /usr/include/c++/13.1.1/functional:63,
                 from /tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/fem/dofmapbuilder.h:10,
                 from /tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/fem/dofmapbuilder.cpp:7:
In member function ‘void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = int]’,
    inlined from ‘constexpr void std::allocator< <template-parameter-1-1> >::deallocate(_Tp*, std::size_t) [with _Tp = int]’ at /usr/include/c++/13.1.1/bits/allocator.h:210:35,
    inlined from ‘static constexpr void std::allocator_traits<std::allocator<_Up> >::deallocate(allocator_type&, pointer, size_type) [with _Tp = int]’ at /usr/include/c++/13.1.1/bits/alloc_traits.h:516:23,
    inlined from ‘constexpr void std::_Vector_base<_Tp, _Alloc>::_M_deallocate(pointer, std::size_t) [with _Tp = int; _Alloc = std::allocator<int>]’ at /usr/include/c++/13.1.1/bits/stl_vector.h:387:19,
    inlined from ‘constexpr void std::vector<_Tp, _Alloc>::reserve(size_type) [with _Tp = int; _Alloc = std::allocator<int>]’ at /usr/include/c++/13.1.1/bits/vector.tcc:93:17,
    inlined from ‘std::pair<std::vector<long int>, std::vector<int> > {anonymous}::get_global_indices(const dolfinx::mesh::Topology&, int32_t, int64_t, const std::vector<long int>&, const std::vector<int>&, const std::vector<std::pair<signed char, int> >&)’ at /tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/fem/dofmapbuilder.cpp:481:24,
    inlined from ‘std::tuple<dolfinx::common::IndexMap, int, dolfinx::graph::AdjacencyList<int> > dolfinx::fem::build_dofmap_data(MPI_Comm, const dolfinx::mesh::Topology&, const ElementDofLayout&, const std::function<std::vector<int>(const dolfinx::graph::AdjacencyList<int>&)>&)’ at /tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/fem/dofmapbuilder.cpp:607:51:
/usr/include/c++/13.1.1/bits/new_allocator.h:168:33: warning: ‘void operator delete(void*, std::size_t)’ called on pointer ‘<unknown>’ with nonzero offset [4, 922337203685[477](https://gitlab.com/dune-archiso/testing/aur/aur/-/jobs/4240499311#L477)5804] [-Wfree-nonheap-object]
  168 |         _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n));
      |                                 ^
In member function ‘_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = int]’,
    inlined from ‘constexpr _Tp* std::allocator< <template-parameter-1-1> >::allocate(std::size_t) [with _Tp = int]’ at /usr/include/c++/13.1.1/bits/allocator.h:198:40,
    inlined from ‘static constexpr _Tp* std::allocator_traits<std::allocator<_Up> >::allocate(allocator_type&, size_type) [with _Tp = int]’ at /usr/include/c++/13.1.1/bits/alloc_traits.h:482:28,
    inlined from ‘constexpr std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = int; _Alloc = std::allocator<int>]’ at /usr/include/c++/13.1.1/bits/stl_vector.h:378:33,
    inlined from ‘constexpr std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = int; _Alloc = std::allocator<int>]’ at /usr/include/c++/13.1.1/bits/stl_vector.h:375:7,
    inlined from ‘constexpr void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = int; _Alloc = std::allocator<int>]’ at /usr/include/c++/13.1.1/bits/stl_vector.h:395:44,
    inlined from ‘constexpr std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = int; _Alloc = std::allocator<int>]’ at /usr/include/c++/13.1.1/bits/stl_vector.h:332:26,
    inlined from ‘constexpr std::vector<_Tp, _Alloc>::vector(size_type, const allocator_type&) [with _Tp = int; _Alloc = std::allocator<int>]’ at /usr/include/c++/13.1.1/bits/stl_vector.h:554:47,
    inlined from ‘std::pair<std::vector<long int>, std::vector<int> > {anonymous}::get_global_indices(const dolfinx::mesh::Topology&, int32_t, int64_t, const std::vector<long int>&, const std::vector<int>&, const std::vector<std::pair<signed char, int> >&)’ at /tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/fem/dofmapbuilder.cpp:[480](https://gitlab.com/dune-archiso/testing/aur/aur/-/jobs/4240499311#L480):44,
    inlined from ‘std::tuple<dolfinx::common::IndexMap, int, dolfinx::graph::AdjacencyList<int> > dolfinx::fem::build_dofmap_data(MPI_Comm, const dolfinx::mesh::Topology&, const ElementDofLayout&, const std::function<std::vector<int>(const dolfinx::graph::AdjacencyList<int>&)>&)’ at /tmp/makepkg/dolfinx/src/dolfinx-0.6.0/cpp/dolfinx/fem/dofmapbuilder.cpp:607:51:
/usr/include/c++/13.1.1/bits/new_allocator.h:147:55: note: returned from ‘void* operator new(std::size_t)’
  147 |         return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp)));
      |                                                       ^
[ 40%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/geometry/BoundingBoxTree.cpp.o
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[ 75%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/mesh/Mesh.cpp.o
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[ 78%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/mesh/Topology.cpp.o
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[ 86%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/mesh/permutationcomputation.cpp.o
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[ 92%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/nls/NewtonSolver.cpp.o
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[ 98%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/refinement/utils.cpp.o
[100%] Linking CXX shared library libdolfinx.so
[100%] Built target dolfinx

Feel free to close the issue.

chrisrichardson · 2023-05-07T16:33:38Z

Thanks @carlosal1015

carlosal1015 added the bug Something isn't working label May 7, 2023

carlosal1015 closed this as completed May 7, 2023

chrisrichardson reopened this May 7, 2023

chrisrichardson closed this as completed May 7, 2023

jorgensd mentioned this issue Dec 14, 2023

Changes preparing for a compatible release with 0.6.0 jpdean/maxwell#16

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[BUG]: error: ‘TimingType’ was not declared in this scope #2645

[BUG]: error: ‘TimingType’ was not declared in this scope #2645

carlosal1015 commented May 7, 2023

garth-wells commented May 7, 2023

carlosal1015 commented May 7, 2023

chrisrichardson commented May 7, 2023

chrisrichardson commented May 7, 2023

carlosal1015 commented May 7, 2023

chrisrichardson commented May 7, 2023

[BUG]: error: ‘TimingType’ was not declared in this scope #2645

[BUG]: error: ‘TimingType’ was not declared in this scope #2645

Comments

carlosal1015 commented May 7, 2023

How to reproduce the bug

Minimal Example (Python)

Output (Python)

Version

DOLFINx git commit

Installation

Additional information

garth-wells commented May 7, 2023

carlosal1015 commented May 7, 2023

chrisrichardson commented May 7, 2023

chrisrichardson commented May 7, 2023

carlosal1015 commented May 7, 2023

chrisrichardson commented May 7, 2023