Isolate petsc4y in Python interface #2703
Merged
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
garth-wells
added
bug
Co-authored-by: Chris Richardson <chris@bpi.cam.ac.uk>
chrisrichardson
approved these changes
Jul 4, 2023
jorgensd
reviewed
Jul 5, 2023
| return PETSc.Vec().createGhostWithArray(ghosts, x.array, size=size, bsize=bs, comm=map.comm) | ||
|
|
||
|
|
||
| def create_petsc_vector(map, bs: int): |
There was a problem hiding this comment.
This should really have a type hint (dolfinx.common.IndexMap)?
jorgensd
added a commit
to jorgensd/dolfinx_mpc
that referenced
this pull request
Jul 5, 2023
… instead. Other internal changes related to: FEniCS/dolfinx#2703
jorgensd
added a commit
to jorgensd/dolfinx-tutorial
that referenced
this pull request
Jul 5, 2023
jorgensd
added a commit
to jorgensd/adios4dolfinx
that referenced
this pull request
Jul 5, 2023
jorgensd
added a commit
to jorgensd/dolfinx-tutorial
that referenced
this pull request
Jul 5, 2023
* Resolve #136 * Fixes related to: FEniCS/dolfinx#2703 * Update changelog
jorgensd
added a commit
to ComputationalPhysiology/oasisx
that referenced
this pull request
Jul 5, 2023
jorgensd
added a commit
to jorgensd/adios4dolfinx
that referenced
this pull request
Jul 5, 2023
jorgensd
added a commit
to ComputationalPhysiology/oasisx
that referenced
this pull request
Jul 5, 2023
Changes related to API change: FEniCS/dolfinx#2703
jorgensd
added a commit
to jorgensd/dolfinx_mpc
that referenced
this pull request
Jul 5, 2023
* Fix mypy * Fix bcs wrapper * Deprecate `dolfinx::la::Vector::set` and access python array directly instead. Other internal changes related to: FEniCS/dolfinx#2703 * Use njit instead of jit to avoid deprecation warning * `dolfinx.la.Vector.bs` -> `dolfinx.la.Vector.block_size` * Fix boundingbox constructor * Various more wrapper changes
jorgensd
added a commit
to jorgensd/dolfinx_ipcs
that referenced
this pull request
Jul 6, 2023
jorgensd
added a commit
to jorgensd/dolfinx-tutorial
that referenced
this pull request
Oct 12, 2023
* Improve workflow handling (#118) * Create common action for all workflows and split them into multiple files * Dokken/update fspace and wmtgs (#127) * fix runs-on * Minor improvements in linearelasticity.md (#124) * Fix various things on release branch * Try adding trame * Revert fundamentals * Membrane code * More updates due to autoformatting * Lagrange -> CG back conversion * Change to github image --------- Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com> * Update petsc arches * Fix bounding boxes and more (#135) * Start fixing code for nightly build * rerun all files * Try fixing subdomains * Fix meshio * PETSc python API update (#137) * Resolve #136 * Fixes related to: FEniCS/dolfinx#2703 * Update changelog * Make sure all notebooks run. Change to pathlib in some examples * Api changes related to: FEniCS/dolfinx#2763 (#142) * Bump version numbers * Bump version numbers (#149) * Fix petsc arch --------- Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>
jorgensd
added a commit
to jorgensd/dolfinx-tutorial
that referenced
this pull request
May 5, 2024
* Improve workflow handling (#118) * Create common action for all workflows and split them into multiple files * Dokken/update fspace and wmtgs (#127) * fix runs-on * Minor improvements in linearelasticity.md (#124) * Fix various things on release branch * Try adding trame * Revert fundamentals * Membrane code * More updates due to autoformatting * Lagrange -> CG back conversion * Change to github image --------- Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com> * Update petsc arches * Fix bounding boxes and more (#135) * Start fixing code for nightly build * rerun all files * Try fixing subdomains * Fix meshio * PETSc python API update (#137) * Resolve #136 * Fixes related to: FEniCS/dolfinx#2703 * Update changelog * Make sure all notebooks run. Change to pathlib in some examples * Api changes related to: FEniCS/dolfinx#2763 (#142) * Bump version numbers * Bump version numbers (#149) * Fix petsc arch * Prepare v0.7.1 (#154) * Merge branch 'main' into release and bump versions * Delete obsolete file * Temporary shift path in nightly test * Make sure there are no warnigns in build * Tabulation * Updates compatible with nightly branch of DOLFINx (#156) * Replace VectorElement and FiniteElement with `basix.ufl.element`. Replace `dolfinx.fem.FunctionSpace` with `dolfinx.fem.functionspace` * More updates * And more * Last vector element updates * Bump pyvista and dolfinx to v0.7.2 (#159) * Bump pyvista and dolfinx to v0.7.2 * remove -r * Add further pyvista deps * Bump versions * Update petsc solver and pc links. Resolves #143 (#160) * Fix typo and issue Issue on page /fem.html #122 (#161) * Compute entity-cell connectivity before calling locate_dofs_topological. Remove soon to be deprecated pyvista syntax for updating time dependent fields. Fix range->np.arange conversion * Update backend in workflow * Fix broken link (#140) + http:// to https:// (#162) * Run book build prior to parallel run * Add back write frame * Fix wrong link * Fix typo in changelog * Merge main into release (#189) * Merge main into release * Apply suggestions from code review * Various fixes when reading through the diff * Further fixes * add missing checkout (#191) * add missing checkout * Add test docker on release PR and release (only push on tag * Remove unused import --------- Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Also:
dolfinx::la::Vectorfunctions for complex types.