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Add load_mercury_relief to load Mercury relief dataset in various re…
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…solutions and registrations
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seisman committed Jan 31, 2024
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1 change: 1 addition & 0 deletions doc/api/index.rst
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Expand Up @@ -227,6 +227,7 @@ and store them in GMT's user data directory.
datasets.load_earth_relief
datasets.load_earth_vertical_gravity_gradient
datasets.load_mars_relief
datasets.load_mercury_relief
datasets.load_moon_relief
datasets.load_venus_relief
datasets.load_sample_data
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1 change: 1 addition & 0 deletions pygmt/datasets/__init__.py
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load_earth_vertical_gravity_gradient,
)
from pygmt.datasets.mars_relief import load_mars_relief
from pygmt.datasets.mercury_relief import load_mercury_relief
from pygmt.datasets.moon_relief import load_moon_relief
from pygmt.datasets.samples import list_sample_data, load_sample_data
from pygmt.datasets.tile_map import load_tile_map
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21 changes: 21 additions & 0 deletions pygmt/datasets/load_remote_dataset.py
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Expand Up @@ -272,6 +272,27 @@ class GMTRemoteDataset(NamedTuple):
"14s": Resolution("14s", registrations=["pixel"], tiled=True),
},
),
"mercury_relief": GMTRemoteDataset(
title="Mercury relief",
name="mercury_relief",
long_name="USGS Mercury relief",
units="meters",
extra_attributes={},
resolutions={
"01d": Resolution("01d"),
"30m": Resolution("30m"),
"20m": Resolution("20m"),
"15m": Resolution("15m"),
"10m": Resolution("10m"),
"06m": Resolution("06m"),
"05m": Resolution("05m", tiled=True),
"04m": Resolution("04m", tiled=True),
"03m": Resolution("03m", tiled=True),
"02m": Resolution("02m", tiled=True),
"01m": Resolution("01m", tiled=True),
"56s": Resolution("56s", registrations=["pixel"], tiled=True),
},
),
"venus_relief": GMTRemoteDataset(
title="Venus relief",
name="venus_relief",
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104 changes: 104 additions & 0 deletions pygmt/datasets/mercury_relief.py
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"""
Function to download the Mercury relief dataset from the GMT data server, and load as
:class:`xarray.DataArray`.
The grids are available in various resolutions.
"""
from typing import Literal

from pygmt.datasets.load_remote_dataset import _load_remote_dataset
from pygmt.helpers import kwargs_to_strings

__doctest_skip__ = ["load_mercury_relief"]


@kwargs_to_strings(region="sequence")
def load_mercury_relief(
resolution="01d",
region=None,
registration: Literal["gridline", "pixel", None] = None,
):
r"""
Load the Mercury relief dataset in various resolutions.
.. figure:: https://www.generic-mapping-tools.org/remote-datasets/_images/GMT_mercury_relief.jpg
:width: 80%
:align: center
Mercury relief dataset.
The grids are downloaded to a user data directory (usually
``~/.gmt/server/mercury/mercury_relief/``) the first time you invoke this function.
Afterwards, it will load the grid from the data directory. So you'll need an
internet connection the first time around.
These grids can also be accessed by passing in the file name
**@mercury_relief**\_\ *res*\[_\ *reg*] to any grid processing function or plotting
method. *res* is the grid resolution (see below), and *reg* is the grid registration
type (**p** for pixel registration or **g** for gridline registration).
The default color palette table (CPT) for this dataset is *@mercury_relief.cpt*.
It's implicitly used when passing in the file name of the dataset to any grid
plotting method if no CPT is explicitly specified. When the dataset is loaded and
plotted as an :class:`xarray.DataArray` object, the default CPT is ignored, and
GMT's default CPT (*turbo*) is used. To use the dataset-specific CPT, you need to
explicitly set ``cmap="@mercury_relief.cpt"``.
Refer to :gmt-datasets:`mercury-relief.html` for more details about available
datasets, including version information and references.
Parameters
----------
resolution : str
The grid resolution. The suffix ``d``, ``m`` and ``s`` stand for arc-degrees,
arc-minutes and arc-seconds. It can be ``"01d"``, ``"30m"``, ``"20m"``,
``"15m"``, ``"10m"``, ``"06m"``, ``"05m"``, ``"04m"``, ``"03m"``, ``"02m"``,
``"01m"``, and ``"56s"``.
region : str or list
The subregion of the grid to load, in the form of a list
[*xmin*, *xmax*, *ymin*, *ymax*] or a string *xmin/xmax/ymin/ymax*. Required for
grids with resolutions higher than 5 arc-minutes (i.e., ``"05m"``).
registration
Grid registration type. Either ``"pixel"`` for pixel registration or
``"gridline"`` for gridline registration. Default is ``None``, means
``"gridline"`` for all resolutions except for ``"52s"`` which is ``"pixel"``
only.
Returns
-------
grid : :class:`xarray.DataArray`
The Mercury relief grid. Coordinates are latitude and longitude in degrees.
Relief is in meters.
Note
----
The registration and coordinate system type of the returned
:class:`xarray.DataArray` grid can be accessed via the GMT accessors (i.e.,
``grid.gmt.registration`` and ``grid.gmt.gtype`` respectively). However, these
properties may be lost after specific grid operations (such as slicing) and will
need to be manually set before passing the grid to any PyGMT data processing or
plotting functions. Refer to :class:`pygmt.GMTDataArrayAccessor` for detailed
explanations and workarounds.
Examples
--------
>>> from pygmt.datasets import load_mercury_relief
>>> # load the default grid (gridline-registered 1 arc-degree grid)
>>> grid = load_mercury_relief()
>>> # load the 30 arc-minutes grid with "gridline" registration
>>> grid = load_mercury_relief(resolution="30m", registration="gridline")
>>> # load high-resolution (5 arc-minutes) grid for a specific region
>>> grid = load_mercury_relief(
... resolution="05m",
... region=[120, 160, 30, 60],
... registration="gridline",
... )
"""
grid = _load_remote_dataset(
dataset_name="mercury_relief",
dataset_prefix="mercury_relief_",
resolution=resolution,
region=region,
registration=registration,
)
return grid
3 changes: 3 additions & 0 deletions pygmt/helpers/caching.py
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Expand Up @@ -65,6 +65,9 @@ def cache_data():
# Moon relief grids
"@moon_relief_01d_g",
"@N00W030.moon_relief_01m_p.nc", # Specific grid for 01m test
# Mercury relief grids
"@mercury_relief_01d_g",
"@N00W030.mercury_relief_01m_p.nc", # Specific grid for 01m test
# Venus relief grids
"@venus_relief_01d_g",
"@N00W030.venus_relief_01m_g.nc", # Specific grid for 01m test
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51 changes: 51 additions & 0 deletions pygmt/tests/test_datasets_mercury_relief.py
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"""
Test basic functionality for loading Mercury relief datasets.
"""
import numpy as np
import numpy.testing as npt
from pygmt.datasets import load_mercury_relief


def test_mercury_relief_01d():
"""
Test some properties of the Mercury relief 01d data.
"""
data = load_mercury_relief(resolution="01d")
assert data.name == "mercury_relief"
assert data.attrs["units"] == "meters"
assert data.attrs["long_name"] == "USGS Mercury relief"
assert data.shape == (181, 361)
assert data.gmt.registration == 0
npt.assert_allclose(data.lat, np.arange(-90, 91, 1))
npt.assert_allclose(data.lon, np.arange(-180, 181, 1))
npt.assert_allclose(data.min(), -5103.5, atol=0.5)
npt.assert_allclose(data.max(), 3416.0, atol=0.5)


def test_mercury_relief_01d_with_region():
"""
Test loading low-resolution Mercury relief with 'region'.
"""
data = load_mercury_relief(resolution="01d", region=[-10, 10, -5, 5])
assert data.shape == (11, 21)
assert data.gmt.registration == 0
npt.assert_allclose(data.lat, np.arange(-5, 6, 1))
npt.assert_allclose(data.lon, np.arange(-10, 11, 1))
npt.assert_allclose(data.min(), -327.0, atol=0.5)
npt.assert_allclose(data.max(), 3027.5, atol=0.5)


def test_mercury_relief_01m_default_registration():
"""
Test that the grid returned by default for the 1 arc-minute resolution has
a "gridline" registration.
"""
data = load_mercury_relief(resolution="01m", region=[-10, -9, 3, 5])
assert data.shape == (121, 61)
assert data.gmt.registration == 0
assert data.coords["lat"].data.min() == 3.0
assert data.coords["lat"].data.max() == 5.0
assert data.coords["lon"].data.min() == -10.0
assert data.coords["lon"].data.max() == -9.0
npt.assert_allclose(data.min(), 1953.0, atol=0.5)
npt.assert_allclose(data.max(), 3721.0, atol=0.5)

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