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Issues: GlobalPathogenAnalysisService/gpas-cli

26 Open 87 Closed
26 Open 87 Closed
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Issues list

gpas auth subcommand to allow windowed IDCS login and token retrieval without accessing GPAS portal enhancement New feature or request
#115 opened Jan 26, 2023 by bede
PyInstaller builds failing with PyInstaller >= 5.6.2
#114 opened Jan 23, 2023 by bede
1
cli 0.8.4 - "cannot pickle '_thread.RLock' object" error when uploading samples with 10 parallel connections
#112 opened Jan 23, 2023 by KuzminaAnna
3
Add relatedness subcommand enhancement New feature or request
#110 opened Jan 5, 2023 by bede
Tests: properly clear up lingering mapping CSVs created during testing
#109 opened Dec 15, 2022 by bede
EC 1.1.4 with gpas-cli 0.6.0 - Error message "unauthorised for this user" appears for invalid tags blocked
#101 opened Nov 24, 2022 by KuzminaAnna
1
EC 1.1.4 : User is only able to upload samples if tags assigned to user has access flag set to yes blocked
#99 opened Nov 24, 2022 by KuzminaAnna
1
Make mapping CSV creation more testable
#98 opened Nov 18, 2022 by bede
Eelectron Client : "fastq file does not exist" error message appears, even if fastq exists blocked cannot reproduce
#96 opened Nov 17, 2022 by KuzminaAnna
2
Migrate to latest Pandera
#91 opened Nov 9, 2022 by bede
1
Add new file types available from revised get_output API
#89 opened Oct 31, 2022 by bede
Move Docker images to GHCR
#84 opened Oct 12, 2022 by bede
Support *.fq.gz suffix
#81 opened Sep 28, 2022 by bede
1
Sensible handling of empty FASTQs
#76 opened Sep 15, 2022 by bede
9
Return forthcoming information about tag-associated sharing as JSON message for EC
#75 opened Sep 13, 2022 by bede
Bundle PyInstaller assets with release
#72 opened Aug 18, 2022 by bede
1
add functionality to specify GUIDs in a plaintext file for gpas download enhancement New feature or request low-priority
#58 opened Jul 21, 2022 by philipwfowler
1
Validate primer scheme enums
#57 opened Jul 20, 2022 by bede
Optional debug to file enhancement New feature or request
#37 opened Jun 28, 2022 by bede
Reorganise long validation if-else block
#36 opened Jun 28, 2022 by bede
Basic documentation
#20 opened Jun 16, 2022 by bede
3 tasks
Module reorganisation
#17 opened Jun 16, 2022 by bede
Convert pandera SchemaModel to DataFrameSchema in order to allow runtime tag validation low-priority
#12 opened Jun 16, 2022 by bede
1
Automatically refresh auth tokens enhancement New feature or request
#3 opened May 20, 2022 by bede
Store auth token as appdata / inside homedir enhancement New feature or request
#2 opened May 20, 2022 by bede
1
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