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Hufford Lab

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  1. NAM-genomes NAM-genomes Public

    Detailed bioinformatics scripts and methods used in the NAM genome paper.

    R 68 28

  2. GenomeQC GenomeQC Public

    R 32 7

  3. Wang_et_al._Demography Wang_et_al._Demography Public

    Repository for the 2017 Genome Biology publication, "The interplay of demography and selection during maize domestication and expansion"

    R 17 4

  4. Maize_NC358 Maize_NC358 Public

    Forked from oushujun/Maize_NC358

    The repository for codes developed to generated the Maize NC358 assemblies and analyses.

    Jupyter Notebook 10 4

  5. Maize_WGS_Build Maize_WGS_Build Public

    Code and Data to include in WGS Build

    Nextflow 7 2

  6. NSF_DEB NSF_DEB Public

    Full Proposal: The Evolutionary Role of Hybridization and Introgression in the Genus Zea

    HTML 4 1

Repositories

Showing 10 of 21 repositories
  • Inbreeding_Depression Public
    HuffordLab/Inbreeding_Depression’s past year of commit activity
    HTML 0 0 0 0 Updated Mar 24, 2024
  • panand_genome_evolution Public

    repository for panand genome evolution paper

    HuffordLab/panand_genome_evolution’s past year of commit activity
    Shell 1 0 0 0 Updated Feb 20, 2024
  • HuffordLab.github.io Public

    Hufford Lab Website

    HuffordLab/HuffordLab.github.io’s past year of commit activity
    Ruby 1 2 0 0 Updated Feb 8, 2024
  • Maize_WGS_Build Public

    Code and Data to include in WGS Build

    HuffordLab/Maize_WGS_Build’s past year of commit activity
    Nextflow 7 2 0 0 Updated Jan 8, 2024
  • streptochaeta Public

    methods for the Streptochaeta genome paper

    HuffordLab/streptochaeta’s past year of commit activity
    Shell 3 1 0 0 Updated Jul 31, 2023
  • Juicer_PanAnd Public

    modified scripts for Juicer to run effeceintly

    HuffordLab/Juicer_PanAnd’s past year of commit activity
    Shell 0 0 0 0 Updated May 1, 2023
  • Gene_Annotation_Pipeline Public

    Gene Annotation Pipeline

    HuffordLab/Gene_Annotation_Pipeline’s past year of commit activity
    2 0 0 0 Updated Sep 21, 2022
  • MaizeGDB_gff3_format Public

    script to convert GFF3 files to maizeGDB specifications

    HuffordLab/MaizeGDB_gff3_format’s past year of commit activity
    Python 0 0 0 0 Updated Sep 21, 2022
  • Hufnagel_et_al._Teosinte_Hybrid_Zones Public

    repository for analysis pipeline and scripts for Hufnagel et al. 2021

    HuffordLab/Hufnagel_et_al._Teosinte_Hybrid_Zones’s past year of commit activity
    R 0 0 0 0 Updated Jun 15, 2022
  • NAM-genomes Public

    Detailed bioinformatics scripts and methods used in the NAM genome paper.

    HuffordLab/NAM-genomes’s past year of commit activity
    R 68 MIT 28 2 0 Updated Mar 2, 2022
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