Merge pull request #115 from IARCbioinfo/v0.3b

Corrected typo in circleCI test
IARCbioinfo · May 3, 2016 · d90c275 · d90c275
2 parents 7cc2e17 + 9fad472
commit d90c275
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/circle.yml b/circle.yml
@@ -48,7 +48,7 @@ test:
       rm -rf work/ .nextflow.* trace.txt* timeline.html* BAM/all_variants.vcf BAM/PDF/
     - | #test on a null coverage region
       cd ~/NGS_data_test/1000G_CEU_TP53/
-      nextflow run ~/needlestack/needlestack.nf -with-docker iarcbioinfo/needlestack --region 7580000-7580004--nsplit 4 --fasta_ref 17.fasta.gz --bam_folder BAM/ 
+      nextflow run ~/needlestack/needlestack.nf -with-docker iarcbioinfo/needlestack --region 17:7580000-7580004--nsplit 4 --fasta_ref 17.fasta.gz --bam_folder BAM/ 
       cp BAM/all_variants.vcf results/$CIRCLE_BRANCH/test6.vcf 
       mkdir -p results/$CIRCLE_BRANCH/PDF/test6
       cp BAM/PDF/*.pdf results/$CIRCLE_BRANCH/PDF/test6/