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plot improved error rate confidence interval #117

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tdelhomme opened this issue May 4, 2016 · 3 comments
Closed

plot improved error rate confidence interval #117

tdelhomme opened this issue May 4, 2016 · 3 comments
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@tdelhomme
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tdelhomme commented May 4, 2016

Plot a better estimated confidence interval (0.01, 0.99) according to the data.
At this time, we compute only the confidence interval for the maximum coverage with qnbinom(), and plot a line from 0 to this value (see big blue dotted lines on the following plot).
The issue is that the shape of this interval is not necessary linear.
Now we would like to compute this confidence interval for a sufficient number of points to be sufficiently accurate. Let's take 1000 equidistant points in {0,max(coverage)} if max(coverage)>1000, otherwise all coverage between 0 and the maximum coverage.

chr17_7572907_7572907_g_c

Use this opportunity to change colors for error rate and confidence interval from blue to black to erase conflict with the contour for qvalue=10.

@tdelhomme tdelhomme added this to the v1.0 milestone May 4, 2016
@tdelhomme tdelhomme self-assigned this May 4, 2016
@tdelhomme
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why minor bug?

@tdelhomme
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I guessed "bug" was only for pipeline crashing...

@mfoll
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mfoll commented May 4, 2016

The current line is wrong, so it's a bug. It's still minor as it's only visual.

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