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Make the main 3 processes pipe-friendly to avoid intermediate outputs #147

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mfoll opened this issue Feb 17, 2017 · 0 comments
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Make the main 3 processes pipe-friendly to avoid intermediate outputs #147

mfoll opened this issue Feb 17, 2017 · 0 comments
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@aurelieGabriel
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enhancement
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v1.1

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@mfoll
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mfoll commented Feb 17, 2017

We should have a single process like samtools mpileup | mpileup2table | needlestack.r
Linked with #146
This involves important changes in needlestack.nf and needlestack.r.
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