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Add an option to only plot somatic mutations #149

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mfoll opened this issue Feb 17, 2017 · 1 comment
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Add an option to only plot somatic mutations #149

mfoll opened this issue Feb 17, 2017 · 1 comment
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@aurelieGabriel
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enhancement
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v1.1

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mfoll commented Feb 17, 2017

linked to #73
@mfoll mfoll modified the milestone: v1.1 Feb 17, 2017
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mfoll commented Mar 6, 2017

Rename the --no_plot option to plot with three possible values:

  • all that will produce plots for all variants (the current default behaviour). This will be the default value when the --pairs_file is not provided.
  • somatic that will only do the plot when a somatic variant is detected. This will be the default value when the --pairs_file is provided.
  • none that will not produce any plot. This will replace the --no_plot flag.

aurelieGabriel added a commit that referenced this issue Mar 24, 2017
@aurelieGabriel
plot options changed : add a option to only plot somatic mutations (#149
82d576a 
) with or without alignment plots (#73)
@mfoll mfoll mentioned this issue Jul 24, 2017
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@mfoll mfoll closed this as completed Jul 24, 2017
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