fixed bug for cst mode that used len(alignment) and not alignment.get…

…_alignment_length() for determining how many sites there are in an MSA
JLSteenwyk · Apr 12, 2024 · ac34a56 · ac34a56
1 parent d29a57d
commit ac34a56
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/clipkit/clipkit.py b/clipkit/clipkit.py
@@ -107,7 +107,7 @@ def run(
 
     site_positions_to_trim = None
     if mode == TrimmingMode.cst:
-        aln_length = len(alignment)
+        aln_length = alignment.get_alignment_length()
         site_positions_to_trim = (
             get_custom_sites_to_trim(auxiliary_file, aln_length) or []
         )

diff --git a/clipkit/version.py b/clipkit/version.py
@@ -1 +1 @@
-__version__ = "2.2.5"
+__version__ = "2.2.6"