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* upstream/master:
  snap: fix for native-messaging-host permissions (#6062)
  Refine list of external libraries
  Update JDK14 from 34 to Build 36 (2020/2/6) - Release Candidate
  Also release a binary in the "master-release" branch (which is to test releases)
  Refine CHANGELOG.md (markdown-lint)
  Add authors
  Add authors of 5fa1dcf
  New Crowdin translations (#6059)
  Lint README.md
  Squashed 'src/main/resources/csl-styles/' changes from 1ab0241..265a3a9
  JournalList: Minor corrections (#6043)
  Squashed 'src/main/resources/csl-styles/' changes from 566df87..1ab0241
  Add use statement for mariadb.
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Siedlerchr committed Mar 4, 2020
2 parents b03c4dd + 21c6e5e commit cb699a4
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7 changes: 4 additions & 3 deletions .github/workflows/deployment.yml
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Expand Up @@ -4,6 +4,7 @@ on:
push:
branches:
- master
- master-release
paths-ignore:
- 'docs/**'
- 'src/test/**'
Expand All @@ -23,17 +24,17 @@ jobs:
include:
- os: ubuntu-latest
displayName: linux
jpackageDownload: https://download.java.net/java/early_access/jdk14/34/GPL/openjdk-14-ea+34_linux-x64_bin.tar.gz
jpackageDownload: https://download.java.net/java/GA/jdk14/076bab302c7b4508975440c56f6cc26a/36/GPL/openjdk-14_linux-x64_bin.tar.gz
jdk14Path: /jdk-14
archivePortable: tar -c -C build/distribution JabRef | pigz --rsyncable > build/distribution/JabRef-portable_linux.tar.gz && rm -R build/distribution/JabRef
- os: windows-latest
displayName: windows
jpackageDownload: https://download.java.net/java/early_access/jdk14/34/GPL/openjdk-14-ea+34_windows-x64_bin.zip
jpackageDownload: https://download.java.net/java/GA/jdk14/076bab302c7b4508975440c56f6cc26a/36/GPL/openjdk-14_windows-x64_bin.zip
jdk14Path: /jdk-14
archivePortable: 7z a -r build/distribution/JabRef-portable_windows.zip ./build/distribution/JabRef && rm -R build/distribution/JabRef
- os: macOS-latest
displayName: macOS
jpackageDownload: https://download.java.net/java/early_access/jdk14/34/GPL/openjdk-14-ea+34_osx-x64_bin.tar.gz
jpackageDownload: https://download.java.net/java/GA/jdk14/076bab302c7b4508975440c56f6cc26a/36/GPL/openjdk-14_osx-x64_bin.tar.gz
jdk14Path: /jdk-14.jdk/Contents/Home
archivePortable: brew install pigz && tar -c -C build/distribution JabRef.app | pigz --rsyncable > build/distribution/JabRef-portable_macos.tar.gz && rm -R build/distribution/JabRef.app

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2 changes: 2 additions & 0 deletions .mailmap
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Expand Up @@ -186,3 +186,5 @@ Michal Rican <michal.rican@gmail.com>
Param Mittal <parammittal16@gmail.com>
Victor Michelan <venanciuslm@gmail.com>
P4trice <34972281+P4trice@users.noreply.github.com>
Julien Bénard <50318255+Julien29121998@users.noreply.github.com>
Alexsandro Lauber <alexlauber@outlook.com>
13 changes: 13 additions & 0 deletions AUTHORS
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Expand Up @@ -77,6 +77,7 @@ Daniel Svärd
David Gleich
David Méndez
David Weitzman
Dawid Motyka
Dawid Owoc
Deepak Kumar
Dennis Tschechlov
Expand Down Expand Up @@ -112,6 +113,7 @@ ffffatgoose
Florian Beetz
Florian Straßer
Foivos Christoulakis
fpguy
Francois Charette
Frank Steimle
frasca80
Expand All @@ -121,6 +123,7 @@ Galileo Sartor
Geoffrey Taerim Kim
Gert Renckens
Gregor Herrmann
guenesaydin
Guillaume Gardey
Hakan Duran
Hannes Restel
Expand All @@ -141,6 +144,7 @@ Jeff Miller
Jeffrey Kuhn
Jeffrey Sander
Jens Döcke
joeyzgraggen
Johannes Hupe
Johannes Manner
John David
Expand All @@ -153,6 +157,7 @@ josephshin93
Joshua Ramon Enslin
José Jesús Sinohui Fernández
Julian Pfeifer
Julien Bénard
Jure Slak
József Pallagi
Jörg Lenhard
Expand Down Expand Up @@ -182,7 +187,9 @@ Li Zhilin
Ling Wang
Linus Dietz
Lorenzo Genta
Lucas Beretti
Luciana de Melo e Abud
Lugduni Desrosiers
Luis Romero
Mairieli Wessel
Malik Atalla
Expand All @@ -203,6 +210,7 @@ Mattia Bunel
Mattias Ulbrich
mcmoody
Meltem Demirköprü
MhhhxX
Michael Beckmann
Michael Falkenthal
Michael Lass
Expand Down Expand Up @@ -230,10 +238,12 @@ Nico Schlömer
Nicolas Pavillon
Nikita Borovikov
nikmilpv
NikodemKch
Niv Ierushalmi
Nivedha Sunderraj
Nizar N. Batada
noravanq
obsluk00
Olaf Lenz
Oliver Beckmann
Oliver Kopp
Expand Down Expand Up @@ -304,6 +314,7 @@ Sven Jäger
systemoperator
Thiago Toledo
Thomas Arildsen
Thomas F. Duellmann
Thomas Ilsche
Thorsten Dahlheimer
Tim Kilian
Expand All @@ -313,6 +324,7 @@ Tobias Boceck
Tobias Bouschen
Tobias Denkinger
Tobias Diez
Tomás Morales de Luna
Tony K
Toralf Senger
uid112001
Expand All @@ -321,6 +333,7 @@ Ulrik Stervbo
UltimaBGD
Uwe Kuehn
Valentin Pons
Venceslas Roullier
Victor Figueira
Victor Michelan
Vincent W. Yang
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49 changes: 25 additions & 24 deletions CHANGELOG.md
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Expand Up @@ -13,13 +13,14 @@ We refer to [GitHub issues](https://github.com/JabRef/jabref/issues) by using `#

### Changed

- We reintroduced the possibility to extract references from plain text (using GROBID) [#5614](https://github.com/JabRef/jabref/pull/5614)
- Added browser integration to the snap package for firefox/chromium browsers. [#6062](https://github.com/JabRef/jabref/pull/6062)
- We reintroduced the possibility to extract references from plain text (using [GROBID](https://grobid.readthedocs.io/en/latest/)). [#5614](https://github.com/JabRef/jabref/pull/5614)
- We changed the open office panel to show buttons in rows of three instead of going straight down to save space as the button expanded out to take up unnecessary horizontal space. [#5479](https://github.com/JabRef/jabref/issues/5479)
- We cleaned up the group add/edit dialog. [#5826](https://github.com/JabRef/jabref/pull/5826)
- We reintroduced the index column. [#5844](https://github.com/JabRef/jabref/pull/5844)
- Filenames of external files can no longer contain curly braces. [#5926](https://github.com/JabRef/jabref/pull/5926)
- We made the filters more easily accessible in the integrity check dialog. [#5955](https://github.com/JabRef/jabref/pull/5955)
- We reimplemented and improved the dialog "Customize entry types" [#4719](https://github.com/JabRef/jabref/issues/4719)
- We reimplemented and improved the dialog "Customize entry types". [#4719](https://github.com/JabRef/jabref/issues/4719)

### Fixed

Expand Down Expand Up @@ -53,7 +54,6 @@ We refer to [GitHub issues](https://github.com/JabRef/jabref/issues) by using `#
- Ampersands are no longer escaped by default in the `bib` file. If you want to keep the current behaviour, you can use the new "Escape Ampersands" formatter as a save action. [#5869](https://github.com/JabRef/jabref/issues/5869)
- The "Merge Entries" entry was removed from the Quality Menu. Users should use the right-click menu instead. [#6021](https://github.com/JabRef/jabref/pull/6021)


## [5.0-beta] – 2019-12-15

### Changed
Expand Down Expand Up @@ -130,12 +130,12 @@ We refer to [GitHub issues](https://github.com/JabRef/jabref/issues) by using `#
- We removed an internal step in the [ISBN-to-BibTeX fetcher](https://docs.jabref.org/import-using-publication-identifiers/isbntobibtex): The [ISBN to BibTeX Converter](https://manas.tungare.name/software/isbn-to-bibtex) by [@manastungare](https://github.com/manastungare) is not used anymore, because it is offline: "people using this tool have not been generating enough sales for Amazon."
- We removed the option to control the default drag and drop behaviour. You can use the modifier keys (like CtrL or Alt) instead.


## [5.0-alpha] – 2019-08-25

### Changed
- We added eventitle, eventdate and venue fields to @unpublished entry type.
- We added @software and @dataSet entry type to biblatex.

- We added eventitle, eventdate and venue fields to `@unpublished` entry type.
- We added `@software` and `@dataSet` entry type to biblatex.
- All fields are now properly sorted alphabetically (in the subgroups of required/optional fields) when the entry is written to the bib file.
- We fixed an issue where some importers used the field `pubstatus` instead of the standard BibTeX field `pubstate`.
- We changed the latex command removal for docbook exporter. [#3838](https://github.com/JabRef/jabref/issues/3838)
Expand All @@ -154,12 +154,12 @@ We refer to [GitHub issues](https://github.com/JabRef/jabref/issues) by using `#
Because of this change, the last-used cleanup operations were reset.
- We changed the minimum required version of Java to 1.8.0_171, as this is the latest release for which the automatic Java update works. [#4093](https://github.com/JabRef/jabref/issues/4093)
- The special fields like `Printed` and `Read status` now show gray icons when the row is hovered.
- We added a button in the tab header which allows you to close the database with one click. https://github.com/JabRef/jabref/issues/494
- Sorting in the main table now takes information from cross-referenced entries into account. https://github.com/JabRef/jabref/issues/2808
- We added a button in the tab header which allows you to close the database with one click. [#494](https://github.com/JabRef/jabref/issues/494)
- Sorting in the main table now takes information from cross-referenced entries into account. [#2808](https://github.com/JabRef/jabref/issues/2808)
- If a group has a color specified, then entries matched by this group have a small colored bar in front of them in the main table.
- Change default icon for groups to a circle because a colored version of the old icon was hard to distinguish from its black counterpart.
- In the main table, the context menu appears now when you press the "context menu" button on the keyboard. [feature request in the forum](http://discourse.jabref.org/t/how-to-enable-keyboard-context-key-windows)
- We added icons to the group side panel to quickly switch between `union` and `intersection` group view mode https://github.com/JabRef/jabref/issues/3269.
- We added icons to the group side panel to quickly switch between `union` and `intersection` group view mode. [#3269](https://github.com/JabRef/jabref/issues/3269).
- We use `https` for [fetching from most online bibliographic database](https://docs.jabref.org/import-using-online-bibliographic-database).
- We changed the default keyboard shortcuts for moving between entries when the entry editor is active to ̀<kbd>alt</kbd> + <kbd>up/down</kbd>.
- Opening a new file now prompts the directory of the currently selected file, instead of the directory of the last opened file.
Expand All @@ -171,8 +171,8 @@ We refer to [GitHub issues](https://github.com/JabRef/jabref/issues) by using `#
- We removed the redundant new lines of markings and wrapped the summary in the File annotation tab. [#3823](https://github.com/JabRef/jabref/issues/3823)
- We add auto URL formatting when user paste link to URL field in entry editor. [koppor#254](https://github.com/koppor/jabref/issues/254)
- We added a minimum height for the entry editor so that it can no longer be hidden by accident. [#4279](https://github.com/JabRef/jabref/issues/4279)
- We added a new keyboard shortcut so that the entry editor could be closed by <kbd>Ctrl</kbd> + <kbd>E</kbd>. [#4222] (https://github.com/JabRef/jabref/issues/4222)
- We added an option in the preference dialog box, that allows user to pick the dark or light theme option. [#4130] (https://github.com/JabRef/jabref/issues/4130)
- We added a new keyboard shortcut so that the entry editor could be closed by <kbd>Ctrl</kbd> + <kbd>E</kbd>. [#4222](https://github.com/JabRef/jabref/issues/4222)
- We added an option in the preference dialog box, that allows user to pick the dark or light theme option. [#4130](https://github.com/JabRef/jabref/issues/4130)
- We updated the Related Articles tab to accept JSON from the new version of the Mr. DLib service
- We added an option in the preference dialog box that allows user to choose behavior after dragging and dropping files in Entry Editor. [#4356](https://github.com/JabRef/jabref/issues/4356)
- We added the ability to have an export preference where previously "File"-->"Export"/"Export selected entries" would not save the user's preference[#4495](https://github.com/JabRef/jabref/issues/4495)
Expand Down Expand Up @@ -205,38 +205,37 @@ We refer to [GitHub issues](https://github.com/JabRef/jabref/issues) by using `#
- We added an option in preferences to allow for integers in field "edition" when running database in bibtex mode. [#4680](https://github.com/JabRef/jabref/issues/4680)
- We added the ability to use negation in export filter layouts. [#5138](https://github.com/JabRef/jabref/pull/5138)


### Fixed

- We fixed an issue where JabRef died silently for the user without enough inotify instances [#4874](https://github.com/JabRef/jabref/issues/4847)
- We fixed an issue where corresponding groups are sometimes not highlighted when clicking on entries [#3112](https://github.com/JabRef/jabref/issues/3112)
- We fixed an issue where custom exports could not be selected in the 'Export (selected) entries' dialog [#4013](https://github.com/JabRef/jabref/issues/4013)
- Italic text is now rendered correctly. https://github.com/JabRef/jabref/issues/3356
- The entry editor no longer gets corrupted after using the source tab. https://github.com/JabRef/jabref/issues/3532 https://github.com/JabRef/jabref/issues/3608 https://github.com/JabRef/jabref/issues/3616
- We fixed multiple issues where entries did not show up after import if a search was active. https://github.com/JabRef/jabref/issues/1513 https://github.com/JabRef/jabref/issues/3219
- We fixed an issue where the group tree was not updated correctly after an entry was changed. https://github.com/JabRef/jabref/issues/3618
- We fixed an issue where a right-click in the main table selected a wrong entry. https://github.com/JabRef/jabref/issues/3267
- We fixed an issue where in rare cases entries where overlayed in the main table. https://github.com/JabRef/jabref/issues/3281
- We fixed an issue where selecting a group messed up the focus of the main table and the entry editor. https://github.com/JabRef/jabref/issues/3367
- We fixed an issue where composite author names were sorted incorrectly. https://github.com/JabRef/jabref/issues/2828
- Italic text is now rendered correctly. [#3356](https://github.com/JabRef/jabref/issues/3356)
- The entry editor no longer gets corrupted after using the source tab. [#3532](https://github.com/JabRef/jabref/issues/3532) [#3608](https://github.com/JabRef/jabref/issues/3608) [#3616](https://github.com/JabRef/jabref/issues/3616)
- We fixed multiple issues where entries did not show up after import if a search was active. [#1513](https://github.com/JabRef/jabref/issues/1513) [#3219](https://github.com/JabRef/jabref/issues/3219))
- We fixed an issue where the group tree was not updated correctly after an entry was changed. [#3618](https://github.com/JabRef/jabref/issues/3618)
- We fixed an issue where a right-click in the main table selected a wrong entry. [#3267](https://github.com/JabRef/jabref/issues/3267)
- We fixed an issue where in rare cases entries where overlayed in the main table. [#3281](https://github.com/JabRef/jabref/issues/3281)
- We fixed an issue where selecting a group messed up the focus of the main table and the entry editor. [#3367](https://github.com/JabRef/jabref/issues/3367)
- We fixed an issue where composite author names were sorted incorrectly. [#2828](https://github.com/JabRef/jabref/issues/2828)
- We fixed an issue where commands followed by `-` didn't work. [#3805](https://github.com/JabRef/jabref/issues/3805)
- We fixed an issue where a non-existing aux file in a group made it impossible to open the library. [#4735](https://github.com/JabRef/jabref/issues/4735)
- We fixed an issue where some journal names were wrongly marked as abbreviated. [#4115](https://github.com/JabRef/jabref/issues/4115)
- We fixed an issue where the custom file column were sorted incorrectly. https://github.com/JabRef/jabref/issues/3119
- We fixed an issue where the custom file column were sorted incorrectly. [#3119](https://github.com/JabRef/jabref/issues/3119)
- We improved the parsing of author names whose infix is abbreviated without a dot. [#4864](https://github.com/JabRef/jabref/issues/4864)
- We fixed an issues where the entry losses focus when a field is edited and at the same time used for sorting. https://github.com/JabRef/jabref/issues/3373
- We fixed an issue where the menu on Mac OS was not displayed in the usual Mac-specific way. https://github.com/JabRef/jabref/issues/3146
- We improved the integrity check for page numbers. [#4113](https://github.com/JabRef/jabref/issues/4113) and [feature request in the forum](http://discourse.jabref.org/t/pages-field-allow-use-of-en-dash/1199)
- We fixed an issue where the order of fields in customized entry types was not saved correctly. [#4033](http://github.com/JabRef/jabref/issues/4033)
- We fixed an issue where renaming a group did not change the group name in the interface. [#3189](https://github.com/JabRef/jabref/issues/3189)
- We fixed an issue where the groups tree of the last database was still shown even after the database was already closed.
- We fixed an issue where the "Open file dialog" may disappear behind other windows. https://github.com/JabRef/jabref/issues/3410
- We fixed an issue where the "Open file dialog" may disappear behind other windows. [#3410](https://github.com/JabRef/jabref/issues/3410)
- We fixed an issue where the number of entries matched was not updated correctly upon adding or removing an entry. [#3537](https://github.com/JabRef/jabref/issues/3537)
- We fixed an issue where the default icon of a group was not colored correctly.
- We fixed an issue where the first field in entry editor was not focused when adding a new entry. [#4024](https://github.com/JabRef/jabref/issues/4024)
- We reworked the "Edit file" dialog to make it resizeable and improved the workflow for adding and editing files https://github.com/JabRef/jabref/issues/2970
- We reworked the "Edit file" dialog to make it resizeable and improved the workflow for adding and editing files [#2970](https://github.com/JabRef/jabref/issues/2970)
- We fixed an issue where custom name formatters were no longer found correctly. [#3531](https://github.com/JabRef/jabref/issues/3531)
- We fixed an issue where the month was not shown in the preview https://github.com/JabRef/jabref/issues/3239.
- We fixed an issue where the month was not shown in the preview. [#3239](https://github.com/JabRef/jabref/issues/3239)
- Rewritten logic to detect a second jabref instance. [#4023](https://github.com/JabRef/jabref/issues/4023)
- We fixed an issue where the "Convert to BibTeX-Cleanup" moved the content of the `file` field to the `pdf` field [#4120](https://github.com/JabRef/jabref/issues/4120)
- We fixed an issue where the preview pane in entry preview in preferences wasn't showing the citation style selected [#3849](https://github.com/JabRef/jabref/issues/3849)
Expand Down Expand Up @@ -288,3 +287,5 @@ The changelog of JabRef 2.11 and all previous versions is available as [text fil
[Unreleased]: https://github.com/JabRef/jabref/compare/v5.0-beta...HEAD
[5.0-beta]: https://github.com/JabRef/jabref/compare/v5.0-alpha...v5.0-beta
[5.0-alpha]: https://github.com/JabRef/jabref/compare/v4.3...v5.0-alpha

<!-- markdownlint-disable-file MD024 MD033 -->
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