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Releases: NBISweden/workshop-ngsintro

workshop-ngsintro-v2403

02 Jul 15:14
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  • Website
    • Upgraded to quarto 1.4
    • Removed lightbox extension
    • Updated custom lua meta shortcode
    • Preload google fonts in webpage header
    • Added 404
    • Custom title slide for revealjs
    • Added reveal logo extension
    • Updated css style and hero images
    • In schedule, youtube links open in new tab
  • Updated docker image to quarto 1.4
  • RNASeq
    • Corrections and updates to links and references
    • Updated versions in rnaseq lab
    • Reorganised some images for better PDF output
    • Code style formatting
  • Removed $ from all linux labs
  • Compressed PDFs

workshop-ngsintro-v2311

17 Nov 17:09
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  • Source documents used for Nov 2023 workshop in Uppsala
  • Course website and materials built using Quarto
  • Docker image updated to Quarto
  • Reorganized directory structure
  • TA hover popup labels added to Schedule
  • Canvas processing disabled in github actions
  • Canvas site changed to one page with whole github pages site embedded in it.
  • Reservations removed from labs due to magnetic reservations

workshop-ngsintro-v2302

22 Feb 21:56
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  • Source documents used for Feb 2023 multi-site hybrid workshop
  • Pipelines covered by Franziska Bonath / Maxime Garcia
  • Nextflow pipeline added to RNA-Seq
  • Data management added back to schedule
  • Open session removed
  • Youtube playlist released

workshop-ngsintro-v2209

07 Oct 19:08
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  • Source documents used for Sep 2022 workshop.

workshop-ngsintro-v2203

08 Apr 08:56
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  • Source documents used for Mar 2022 workshop.

workshop-ngsintro-v2111

29 Nov 08:27
7477c51
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  • Source documents used for Nov 2021 workshop.
  • Covid Online edition 😷
  • Updated boxy, theme styles, colour, landing image, chunk.title
  • Links on canvas version removed
  • RNASeq slides simplified
  • Leaflet disabled
  • Precourse instructions updated, Syllabus split separate
  • Variant calling lab: moved sbatch scripts to end
  • Updated linux intro, uppmax intro, linux filetypes, linux advanced, qol slides
  • Added admin resources page

workshop-ngsintro-v2105

31 Aug 07:54
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  • Source documents used for May 2021 workshop.
  • Covid Online edition 😷
  • Added parallel version without navigation for canvas

workshop-ngsintro-v2011

16 Nov 16:59
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  • Source documents used for Nov 2020 workshop.
  • Covid Online edition 😷

workshop-ngsintro-v2005-snapshot

17 Sep 07:44
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Pre-release
  • Workshop was cancelled due to covid
  • Variant calling part has changed significantly from previous version

workshop-ngsintro-v2001

31 Jan 16:20
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Source documents used for Jan 2020 course in Uppsala.