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🔄 synced local '.github/workflows/CI.yml' with remote '.github/workfl…
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facusapienza21 committed Aug 1, 2024
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Showing 1 changed file with 47 additions and 37 deletions.
84 changes: 47 additions & 37 deletions .github/workflows/CI.yml
Original file line number Diff line number Diff line change
Expand Up @@ -23,63 +23,73 @@ jobs:
matrix:
version:
- '1.10'
python: [3.9]
os:
- ubuntu-latest
python:
- '3.10'
os: [ubuntu-latest, macos-latest]
arch:
- x64
steps:
- uses: actions/checkout@v2
# Cancel ongoing CI test runs if pushing to branch again before the previous tests
# have finished
- name: Cancel ongoing test runs for previous commits
uses: styfle/cancel-workflow-action@0.12.1
with:
access_token: ${{ github.token }}
# Do tests
- uses: actions/checkout@v4
- name: Set up Python 🐍 ${{ matrix.python }}
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python }}
- name: Create environment with micromamba 🐍🖤
uses: mamba-org/setup-micromamba@v1
with:
micromamba-version: '1.5.6-0'
environment-file: ./environment.yml
environment-name: oggm_env # it is recommendable to add both name and yml file.
init-shell: bash
cache-environment: true
# condarc-file: ./condarc.yml # If necessary, we can include .condarc to configure environment
- name: Test creation of environment with micromamba 🔧🐍🖤
run: |
which python
conda env export
shell: bash -el {0}
- name: Update certifi
run: |
pip install --upgrade certifi
python-version: ${{ matrix.python }}
- name: Install certifi and set SSL_CERT_FILE
run: |
pip install --upgrade certifi
echo "SSL_CERT_FILE=$(python -c 'import certifi; print(certifi.where())')" >> $GITHUB_ENV
shell: bash -el {0}
# - name: Test OGGM installation 🔧🌎
# run: pytest.oggm
# shell: bash -el {0}
- name: Set ENV Variables for PyCall.jl 🐍 📞
run: export PYTHON=/home/runner/micromamba/envs/oggm_env/bin/python
shell: bash -el {0}
- uses: julia-actions/setup-julia@v1
- uses: julia-actions/setup-julia@latest
with:
version: ${{ matrix.version }}
arch: ${{ matrix.arch }}
- name: Check Julia SSL certifications 🔎🔐
run: julia -e 'using NetworkOptions; println(NetworkOptions.bundled_ca_roots()); println(NetworkOptions.ca_roots())'
shell: bash -el {0}
- uses: julia-actions/cache@v1
- name: Install dependencies on Ubuntu
if: matrix.os == 'ubuntu-latest'
run: |
sudo apt-get update
sudo apt-get install -y libxml2
echo "/usr/lib/x86_64-linux-gnu" | sudo tee -a /etc/ld.so.conf.d/libxml2.conf
sudo ldconfig
export PKG_CONFIG_PATH="/usr/local/opt/libxml2/lib/pkgconfig"
shell: bash -el {0}
- name: Install dependencies on macOS
if: matrix.os == 'macos-latest'
run: |
brew install libxml2
export PKG_CONFIG_PATH="/usr/local/opt/libxml2/lib/pkgconfig"
shell: bash -el {0}
- uses: julia-actions/cache@v2
with:
cache-registries: "true"
cache-compiled: "true"
- uses: actions/cache@v4
env:
cache-name: cache-artifacts
with:
path: ~/.julia/artifacts
key: ${{ runner.os }}-test-${{ env.cache-name }}-${{ hashFiles('**/Project.toml') }}
restore-keys: |
${{ runner.os }}-test-${{ env.cache-name }}-
${{ runner.os }}-test-
${{ runner.os }}-
- uses: julia-actions/julia-buildpkg@v1
env:
PYTHON : /home/runner/micromamba/envs/oggm_env/bin/python
# The SSL certificate path can be readed from the action "Check Julia SSL certifications"
SSL_CERT_FILE: /etc/ssl/certs/ca-certificates.crt
- uses: julia-actions/julia-runtest@v1
JULIA_SSL_CA_ROOTS_PATH: ""
- uses: julia-actions/julia-runtest@latest
env:
PYTHON : /home/runner/micromamba/envs/oggm_env/bin/python
SSL_CERT_FILE: /etc/ssl/certs/ca-certificates.crt
JULIA_SSL_CA_ROOTS_PATH: ""
- uses: julia-actions/julia-processcoverage@v1
- uses: codecov/codecov-action@v3
- uses: codecov/codecov-action@v4
with:
token: ${{secrets.CODECOV_TOKEN}}
files: lcov.info

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