Handle NaN in apply_mask input mask (#1376)
#253
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| # Publish archives to PyPI and TestPyPI using GitHub Actions | |
| name: Publish to PyPI | |
| # Only run for tagged releases | |
| on: | |
| release: | |
| types: | |
| - released | |
| push: | |
| branches: | |
| - main | |
| workflow_dispatch: | |
| jobs: | |
| build-artifact: | |
| name: Build echopype package | |
| runs-on: ubuntu-20.04 | |
| if: github.repository == 'OSOceanAcoustics/echopype' | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| # fetch all history so that setuptools-scm works | |
| fetch-depth: 0 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5.1.1 | |
| with: | |
| python-version: 3.9 | |
| - name: Install dependencies | |
| run: python -m pip install setuptools wheel | |
| # This step is only necessary for testing purposes and for TestPyPI | |
| - name: Fix up version string for TestPyPI | |
| if: ${{ !startsWith(github.ref, 'refs/tags') }} | |
| run: | | |
| # Change setuptools-scm local_scheme to "no-local-version" so the | |
| # local part of the version isn't included, making the version string | |
| # compatible with PyPI. | |
| sed --in-place "s/node-and-date/no-local-version/g" pyproject.toml | |
| - name: Build source and wheel distributions | |
| run: | | |
| python setup.py sdist bdist_wheel | |
| echo "" | |
| echo "Generated files:" | |
| ls -lh dist/ | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: releases | |
| path: dist | |
| test-built-dist: | |
| name: Test echopype package | |
| needs: build-artifact | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - uses: actions/setup-python@v5.1.1 | |
| name: Install Python | |
| with: | |
| python-version: 3.9 | |
| - uses: actions/download-artifact@v4 | |
| with: | |
| name: releases | |
| path: dist | |
| - name: List contents of built dist | |
| run: | | |
| ls -ltrh | |
| ls -ltrh dist | |
| - name: Publish to Test PyPI | |
| uses: pypa/gh-action-pypi-publish@v1.9.0 | |
| with: | |
| password: ${{ secrets.TEST_PYPI_API_TOKEN }} | |
| repository_url: https://test.pypi.org/legacy/ | |
| verbose: true | |
| skip_existing: true | |
| - name: Check pypi packages | |
| run: | | |
| sleep 3 | |
| python -m pip install --upgrade pip | |
| echo "=== Testing wheel file ===" | |
| # Install wheel to get dependencies and check import | |
| python -m pip install --extra-index-url https://test.pypi.org/simple --upgrade --pre echopype | |
| python -c "import echopype; print(echopype.__version__)" | |
| echo "=== Done testing wheel file ===" | |
| echo "=== Testing source tar file ===" | |
| # Install tar gz and check import | |
| python -m pip uninstall --yes echopype | |
| python -m pip install --extra-index-url https://test.pypi.org/simple --upgrade --pre --no-binary=:all: echopype | |
| python -c "import echopype; print(echopype.__version__)" | |
| echo "=== Done testing source tar file ===" | |
| publish-pypi: | |
| name: Push echopype to production pypi | |
| needs: test-built-dist | |
| if: startsWith(github.ref, 'refs/tags') | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/download-artifact@v4 | |
| with: | |
| name: releases | |
| path: dist | |
| - name: Publish to PyPI | |
| uses: pypa/gh-action-pypi-publish@v1.9.0 | |
| with: | |
| password: ${{ secrets.PYPI_API_TOKEN }} |