Merge remote-tracking branch 'upstream/main' into Ognimalf/main

* upstream/main: Autosave folder and checkbox is remembered (JabRef#9000) New Crowdin updates (JabRef#8999) Sync group view mode and main table (JabRef#8993) Bump unoloader from 7.3.4 to 7.3.5 (JabRef#8996) Bump libreoffice from 7.3.4 to 7.3.5 (JabRef#8997) Bump java-diff-utils from 4.11 to 4.12 (JabRef#8998) Fix external group metadata changes are not merged (JabRef#8994) New Crowdin updates (JabRef#8995) Reworded t in pr (JabRef#8989) Fixed checkstyle (JabRef#8990) Fix RfcFetcherTest (JabRef#8988) Fixes koppor#521 - Allow to drag&drop selected bib entries to other library tabs (JabRef#8982)
Ognimalf · Jul 29, 2022 · 13c0fa8 · 13c0fa8
2 parents bd37b6c + bd8ede5
commit 13c0fa8
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -16,6 +16,7 @@ Note that this project **does not** adhere to [Semantic Versioning](http://semve
 - We added an extra option in the 'Find Unlinked Files' dialog view to ignore unnecessary files like Thumbs.db, DS_Store, etc. [koppor#373](https://github.com/koppor/jabref/issues/373)
 - JabRef now writes log files. Linux: `$home/.cache/jabref/logs/version`, Windows: `%APPDATA%\..\Local\harawata\jabref\version\logs`, Mac: `Users/.../Library/Logs/jabref/version`
 - We added an importer for Citavi backup files, support ".ctv5bak" and ".ctv6bak" file formats. [#8322](https://github.com/JabRef/jabref/issues/8322)
+- We added a feature to drag selected entries and drop them to other opened inactive library tabs [koppor521](https://github.com/koppor/jabref/issues/521).
 
 ### Changed
 
@@ -58,6 +59,9 @@ Note that this project **does not** adhere to [Semantic Versioning](http://semve
 - We fixed a bug where switching between themes will cause an error/exception. [#8939](https://github.com/JabRef/jabref/pull/8939)
 - We fixed a bug where files that were deleted in the source bibtex file were kept in the index. [#8962](https://github.com/JabRef/jabref/pull/8962)
 - We fixed "Error while sending to JabRef" when the browser extension interacts with JabRef. [JabRef-Browser-Extension#479](https://github.com/JabRef/JabRef-Browser-Extension/issues/479)
+- We fixed a bug where updating group view mode (intersection or union) requires re-selecting groups to take effect. [#6998](https://github.com/JabRef/jabref/issues/6998)
+- We fixed a bug that prevented external group metadata changes from being merged. [#8873](https://github.com/JabRef/jabref/issues/8873)
+- We fixed the shared database opening dialog to remember autosave folder and tick. [#7516](https://github.com/JabRef/jabref/issues/7516)
 
 ### Removed
 

diff --git a/build.gradle b/build.gradle
@@ -133,10 +133,10 @@ dependencies {
 
     implementation 'commons-cli:commons-cli:1.5.0'
 
-    implementation 'org.libreoffice:libreoffice:7.3.4'
-    implementation 'org.libreoffice:unoloader:7.3.4'
+    implementation 'org.libreoffice:libreoffice:7.3.5'
+    implementation 'org.libreoffice:unoloader:7.3.5'
 
-    implementation 'io.github.java-diff-utils:java-diff-utils:4.11'
+    implementation 'io.github.java-diff-utils:java-diff-utils:4.12'
     implementation 'info.debatty:java-string-similarity:2.0.0'
 
     antlr3 'org.antlr:antlr:3.5.3'

diff --git a/src/main/java/org/jabref/gui/JabRefFrame.java b/src/main/java/org/jabref/gui/JabRefFrame.java
@@ -222,6 +222,54 @@ private void initDragAndDrop() {
                 } else {
                     tabbedPane.getTabs().remove(dndIndicator);
                 }
+                // Accept drag entries from MainTable
+                if (event.getDragboard().hasContent(DragAndDropDataFormats.ENTRIES)) {
+                    event.acceptTransferModes(TransferMode.COPY);
+                    event.consume();
+                }
+            });
+
+            this.getScene().setOnDragEntered(event -> {
+                // It is necessary to setOnDragOver for newly opened tabs
+                // drag'n'drop on tabs covered dnd on tabbedPane, so dnd on tabs should contain all dnds on tabbedPane
+                tabbedPane.lookupAll(".tab").forEach(tab -> {
+                    tab.setOnDragOver(tabDragEvent -> {
+                        if (DragAndDropHelper.hasBibFiles(tabDragEvent.getDragboard())) {
+                            tabDragEvent.acceptTransferModes(TransferMode.ANY);
+                            if (!tabbedPane.getTabs().contains(dndIndicator)) {
+                                tabbedPane.getTabs().add(dndIndicator);
+                            }
+                            event.consume();
+                        } else {
+                            tabbedPane.getTabs().remove(dndIndicator);
+                        }
+
+                        if (tabDragEvent.getDragboard().hasContent(DragAndDropDataFormats.ENTRIES)) {
+                            tabDragEvent.acceptTransferModes(TransferMode.COPY);
+                            tabDragEvent.consume();
+                        }
+                    });
+                    tab.setOnDragExited(event1 -> tabbedPane.getTabs().remove(dndIndicator));
+                    tab.setOnDragDropped(tabDragEvent -> {
+                        if (DragAndDropHelper.hasBibFiles(tabDragEvent.getDragboard())) {
+                            tabbedPane.getTabs().remove(dndIndicator);
+                            List<Path> bibFiles = DragAndDropHelper.getBibFiles(tabDragEvent.getDragboard());
+                            OpenDatabaseAction openDatabaseAction = this.getOpenDatabaseAction();
+                            openDatabaseAction.openFiles(bibFiles, true);
+                            tabDragEvent.setDropCompleted(true);
+                            tabDragEvent.consume();
+                        } else {
+                            for (Tab libraryTab : tabbedPane.getTabs()) {
+                                if (libraryTab.getId().equals(tab.getId()) &&
+                                        !tabbedPane.getSelectionModel().getSelectedItem().equals(libraryTab)) {
+                                    ((LibraryTab) libraryTab).dropEntry(stateManager.getLocalDragboard().getBibEntries());
+                                }
+                            }
+                            tabDragEvent.consume();
+                        }
+                    });
+                });
+                event.consume();
             });
 
             this.getScene().setOnDragExited(event -> tabbedPane.getTabs().remove(dndIndicator));

diff --git a/src/main/java/org/jabref/gui/LibraryTab.java b/src/main/java/org/jabref/gui/LibraryTab.java
@@ -7,6 +7,7 @@
 import java.util.List;
 import java.util.Objects;
 import java.util.Optional;
+import java.util.Random;
 
 import javafx.animation.PauseTransition;
 import javafx.application.Platform;
@@ -153,6 +154,10 @@ public LibraryTab(JabRefFrame frame,
 
         this.entryEditor = new EntryEditor(this, externalFileTypes);
 
+        // set LibraryTab ID for drag'n'drop
+        // ID content doesn't matter, we only need different tabs to have different ID
+        this.setId(Long.valueOf(new Random().nextLong()).toString());
+
         Platform.runLater(() -> {
             EasyBind.subscribe(changedProperty, this::updateTabTitle);
             stateManager.getOpenDatabases().addListener((ListChangeListener<BibDatabaseContext>) c ->
@@ -758,6 +763,10 @@ public void paste() {
         mainTable.paste();
     }
 
+    public void dropEntry(List<BibEntry> entriesToAdd) {
+        mainTable.dropEntry(entriesToAdd);
+    }
+
     public void cut() {
         mainTable.cut();
     }

diff --git a/src/main/java/org/jabref/gui/collab/MetaDataChangeViewModel.java b/src/main/java/org/jabref/gui/collab/MetaDataChangeViewModel.java
@@ -39,5 +39,8 @@ public Node description() {
     @Override
     public void makeChange(BibDatabaseContext database, NamedCompound undoEdit) {
         database.setMetaData(metaDataDiff.getNewMetaData());
+        // group change is handled by GroupChangeViewModel, so we set the groups root to the original value
+        // to prevent any inconsistency
+        metaDataDiff.getGroupDifferences().ifPresent(groupDiff -> database.getMetaData().setGroups(groupDiff.getOriginalGroupRoot()));
     }
 }
diff --git a/src/main/java/org/jabref/gui/maintable/MainTable.java b/src/main/java/org/jabref/gui/maintable/MainTable.java
@@ -315,6 +315,12 @@ public void paste() {
         }
     }
 
+    public void dropEntry(List<BibEntry> entriesToAdd) {
+        for (BibEntry entry : entriesToAdd) {
+            importHandler.importEntryWithDuplicateCheck(database, (BibEntry) entry.clone());
+        }
+    }
+
     private void handleOnDragOver(TableRow<BibEntryTableViewModel> row, BibEntryTableViewModel item, DragEvent event) {
         if (event.getDragboard().hasFiles()) {
             event.acceptTransferModes(TransferMode.ANY);
@@ -351,8 +357,9 @@ private void handleOnDragDetected(TableRow<BibEntryTableViewModel> row, BibEntry
 
         // The following is necesary to initiate the drag and drop in javafx, although we don't need the contents
         // It doesn't work without
+        // Drag'n'drop to other tabs use COPY TransferMode, drop to group sidepane use MOVE
         ClipboardContent content = new ClipboardContent();
-        Dragboard dragboard = startDragAndDrop(TransferMode.MOVE);
+        Dragboard dragboard = startDragAndDrop(TransferMode.COPY_OR_MOVE);
         content.put(DragAndDropDataFormats.ENTRIES, "");
         dragboard.setContent(content);
 

diff --git a/src/main/java/org/jabref/gui/maintable/MainTableDataModel.java b/src/main/java/org/jabref/gui/maintable/MainTableDataModel.java
@@ -47,7 +47,10 @@ public MainTableDataModel(BibDatabaseContext context, PreferencesService prefere
 
         entriesFiltered = new FilteredList<>(entriesViewModel);
         entriesFiltered.predicateProperty().bind(
-                EasyBind.combine(stateManager.activeGroupProperty(), stateManager.activeSearchQueryProperty(), (groups, query) -> entry -> isMatched(groups, query, entry))
+                EasyBind.combine(stateManager.activeGroupProperty(),
+                        stateManager.activeSearchQueryProperty(),
+                        groupsPreferences.groupViewModeProperty(),
+                        (groups, query, groupViewMode) -> entry -> isMatched(groups, query, entry))
         );
 
         IntegerProperty resultSize = new SimpleIntegerProperty();

diff --git a/src/main/java/org/jabref/gui/shared/SharedDatabaseLoginDialogViewModel.java b/src/main/java/org/jabref/gui/shared/SharedDatabaseLoginDialogViewModel.java
@@ -212,6 +212,9 @@ private void setPreferences() {
         }
 
         sharedDatabasePreferences.setRememberPassword(rememberPassword.get());
+
+        sharedDatabasePreferences.setFolder(folder.getValue());
+        sharedDatabasePreferences.setAutosave(autosave.get());
     }
 
     /**
@@ -225,6 +228,8 @@ private void applyPreferences() {
         Optional<String> sharedDatabaseUser = sharedDatabasePreferences.getUser();
         Optional<String> sharedDatabasePassword = sharedDatabasePreferences.getPassword();
         boolean sharedDatabaseRememberPassword = sharedDatabasePreferences.getRememberPassword();
+        Optional<String> sharedDatabaseFolder = sharedDatabasePreferences.getFolder();
+        boolean sharedDatabaseAutosave = sharedDatabasePreferences.getAutosave();
         Optional<String> sharedDatabaseKeystoreFile = sharedDatabasePreferences.getKeyStoreFile();
 
         if (sharedDatabaseType.isPresent()) {
@@ -248,6 +253,9 @@ private void applyPreferences() {
         }
 
         rememberPassword.set(sharedDatabaseRememberPassword);
+
+        sharedDatabaseFolder.ifPresent(folder::set);
+        autosave.set(sharedDatabaseAutosave);
     }
 
     private boolean isSharedDatabaseAlreadyPresent(DBMSConnectionProperties connectionProperties) {

diff --git a/src/main/java/org/jabref/logic/bibtex/comparator/GroupDiff.java b/src/main/java/org/jabref/logic/bibtex/comparator/GroupDiff.java
@@ -23,7 +23,7 @@ public static Optional<GroupDiff> compare(MetaData originalMetaData, MetaData ne
         final Optional<GroupTreeNode> newGroups = newMetaData.getGroups();
 
         if (!originalGroups.equals(newGroups)) {
-            return Optional.of(new GroupDiff(newGroups.orElse(null), originalGroups.orElse(null)));
+            return Optional.of(new GroupDiff(originalGroups.orElse(null), newGroups.orElse(null)));
         } else {
             return Optional.empty();
         }

diff --git a/src/main/java/org/jabref/logic/shared/prefs/SharedDatabasePreferences.java b/src/main/java/org/jabref/logic/shared/prefs/SharedDatabasePreferences.java
@@ -25,6 +25,8 @@ public class SharedDatabasePreferences {
     private static final String SHARED_DATABASE_NAME = "sharedDatabaseName";
     private static final String SHARED_DATABASE_USER = "sharedDatabaseUser";
     private static final String SHARED_DATABASE_PASSWORD = "sharedDatabasePassword";
+    private static final String SHARED_DATABASE_FOLDER = "sharedDatabaseFolder";
+    private static final String SHARED_DATABASE_AUTOSAVE = "sharedDatabaseAutosave";
     private static final String SHARED_DATABASE_REMEMBER_PASSWORD = "sharedDatabaseRememberPassword";
     private static final String SHARED_DATABASE_USE_SSL = "sharedDatabaseUseSSL";
     private static final String SHARED_DATABASE_KEYSTORE_FILE = "sharedDatabaseKeyStoreFile";
@@ -77,6 +79,14 @@ public boolean getRememberPassword() {
         return internalPrefs.getBoolean(SHARED_DATABASE_REMEMBER_PASSWORD, false);
     }
 
+    public Optional<String> getFolder() {
+        return getOptionalValue(SHARED_DATABASE_FOLDER);
+    }
+
+    public boolean getAutosave() {
+        return internalPrefs.getBoolean(SHARED_DATABASE_AUTOSAVE, false);
+    }
+
     public boolean isUseSSL() {
         return internalPrefs.getBoolean(SHARED_DATABASE_USE_SSL, false);
     }
@@ -109,6 +119,14 @@ public void setRememberPassword(boolean rememberPassword) {
         internalPrefs.putBoolean(SHARED_DATABASE_REMEMBER_PASSWORD, rememberPassword);
     }
 
+    public void setFolder(String folder) {
+        internalPrefs.put(SHARED_DATABASE_FOLDER, folder);
+    }
+
+    public void setAutosave(boolean autosave) {
+        internalPrefs.putBoolean(SHARED_DATABASE_AUTOSAVE, autosave);
+    }
+
     public void setUseSSL(boolean useSSL) {
         internalPrefs.putBoolean(SHARED_DATABASE_USE_SSL, useSSL);
     }

diff --git a/src/main/resources/l10n/JabRef_fr.properties b/src/main/resources/l10n/JabRef_fr.properties
@@ -19,7 +19,9 @@ Unable\ to\ monitor\ file\ changes.\ Please\ close\ files\ and\ processes\ and\
 
 %0/%1\ entries=%0/%1 entrées
 
+Export\ operation\ finished\ successfully.=L'opération d'export s'est terminée avec succès.
 
+Reveal\ in\ File\ Explorer=Montrer dans l'explorateur de fichiers
 
 %0\ matches\ the\ regular\ expression\ <b>%1</b>=%0 correspond à l'expression régulière <b>%1</b>
 
@@ -703,16 +705,23 @@ Remove\ group=Supprimer le groupe
 
 Remove\ group\ and\ subgroups=Supprimer le groupe et les sous-groupes
 
+Remove\ groups\ and\ subgroups=Supprimer les groupes et les sous-groupes
 
+Remove\ all\ selected\ groups\ and\ keep\ their\ subgroups?=Supprimer tous les groupes sélectionnés et conserver leurs sous-groupes ?
 
+Remove\ group\ "%0"\ and\ keep\ its\ subgroups?=Supprimer le groupe « %0 » et conserver ses sous-groupes ?
 
+Remove\ groups=Supprimer les groupes
 
+Removed\ all\ selected\ groups.=Tous les groupes sélectionnés ont été supprimés.
 
 Remove\ group\ "%0"\ and\ its\ subgroups?=Supprimer le groupe « %0 » et ses sous-groupes ?
 
 Removed\ group\ "%0"\ and\ its\ subgroups.=Groupe « %0 » et ses sous-groupes supprimés.
 
+Remove\ all\ selected\ groups\ and\ their\ subgroups?=Supprimer tous les groupes sélectionnés et leurs sous-groupes ?
 
+Removed\ all\ selected\ groups\ and\ their\ subgroups.=Tous les groupes sélectionnés et leurs sous-groupes ont été supprimés.
 
 Remove\ link=Supprimer le lien
 
@@ -825,6 +834,12 @@ Size=Taille
 Skipped\ -\ No\ PDF\ linked=Sauté - Pas de PDF lié
 Skipped\ -\ PDF\ does\ not\ exist=Omis - Le PDF n'existe pas
 
+JabRef\ skipped\ the\ entry.=JabRef a ignoré l'entrée.
+Import\ error=Erreur d'importation
+Open\ library\ error=Erreur d'ouverture du fichier
+Please\ check\ your\ library\ file\ for\ wrong\ syntax.=Veuillez vérifier la syntaxe de votre fichier bibliographique.
+SourceTab\ error=Erreur de SourceTab
+User\ input\ via\ entry-editor\ in\ `{}bibtex\ source`\ tab\ led\ to\ failure.=La saisie de l'utilisateur via l'éditeur d'entrée dans l'onglet `{}bibtex source` a conduit à un échec.
 
 Sort\ subgroups=Trier les sous-groupes
 
@@ -1244,6 +1259,7 @@ Connection\ failed\!=Échec de la connexion \!
 Connection\ successful\!=Connexion réussie \!
 
 SSL\ Configuration=Configuration SSL
+SSL\ configuration\ changed=Configuration SSL modifiée
 SSL\ certificate\ file=Fichier de certificat SSL
 Duplicate\ Certificates=Dupliquer les certificats
 You\ already\ added\ this\ certificate=Vous avez déjà ajouté ce certificat
@@ -1283,6 +1299,7 @@ Please\ open\ %0\ manually.=Veuillez ouvrir manuellement %0 .
 The\ link\ has\ been\ copied\ to\ the\ clipboard.=Le lien a été copié dans le presse-papiers.
 
 Open\ %0\ file=Ouvrir le fichier %0
+Could\ not\ detect\ terminal\ automatically.\ Please\ define\ a\ custom\ terminal\ in\ the\ preferences.=Impossible de détecter le terminal automatiquement. Veuillez définir un terminal personnalisé dans les préférences.
 
 Cannot\ delete\ file=Le fichier ne peut pas être supprimé
 File\ permission\ error=Erreur due aux permissions du fichier
@@ -1670,6 +1687,8 @@ Issue\ report\ successful=Signalement de l'anomalie réussi
 Your\ issue\ was\ reported\ in\ your\ browser.=Votre anomalie a été affichée dans votre navigateur.
 The\ log\ and\ exception\ information\ was\ copied\ to\ your\ clipboard.=Le journal et les informations d'anomalie ont été copiées dans votre presse-papier.
 Please\ paste\ this\ information\ (with\ Ctrl+V)\ in\ the\ issue\ description.=Veuillez coller ces informations (avec Ctrl+V) dans la description de l'anomalie.
+Last\ notification=Dernière notification
+Check\ the\ event\ log\ to\ see\ all\ notifications=Consultez le journal des événements pour voir toutes les notifications
 
 Host=Hôte
 Port=Port
@@ -2477,4 +2496,22 @@ Success\!\ Finished\ writing\ metadata.=Succès \! Écriture des métadonnées t
 Custom\ API\ key=Clef d'API personnalisée
 Check\ %0\ API\ Key\ Setting=Vérifier les paramètres de la clef d'API %0
 
-
+Edit\ field\ value=Modifier la valeur du champ
+Two\ fields=Deux champs
+Overwrite\ Non\ empty\ fields=Écraser les champs non vides
+Set=Définir
+Append=Ajouter
+Clear\ field=Vider le champ
+Field\ value=Valeur du champ
+Edit\ field\ value\ of\ selected\ entries=Modifier la valeur du champ pour les entrées sélectionnées
+Rename=Renommer
+New\ field\ name=Nouveau nom de champ
+Copy\ value=Copier la valeur
+Move\ value=Déplacer la valeur
+Swap\ values=Permuter les valeurs
+Copy\ or\ move\ the\ value\ of\ one\ field\ to\ another=Copier ou déplacer la valeur d'un champ vers un autre
+Automatic\ field\ editor=Éditeur automatique de champs
+
+(Note\:\ If\ original\ entries\ lack\ keywords\ to\ qualify\ for\ the\ new\ group\ configuration,\ confirming\ here\ will\ add\ them)=(Note \: si les entrées originales n'ont pas de mots-clefs correspondant à la nouvelle configuration du groupe, confirmer ici les ajoutera)
+Assign=Assigner
+Do\ not\ assign=Ne pas assigner
diff --git a/src/test/java/org/jabref/logic/bibtex/comparator/GroupDiffTest.java b/src/test/java/org/jabref/logic/bibtex/comparator/GroupDiffTest.java
@@ -56,7 +56,7 @@ void compareWithChangedGroup() {
 
         Optional<GroupDiff> groupDiff = GroupDiff.compare(originalMetaData, newMetaData);
 
-        Optional<GroupDiff> expectedGroupDiff = Optional.of(new GroupDiff(newMetaData.getGroups().get(), originalMetaData.getGroups().get()));
+        Optional<GroupDiff> expectedGroupDiff = Optional.of(new GroupDiff(originalMetaData.getGroups().get(), newMetaData.getGroups().get()));
 
         assertEquals(expectedGroupDiff.get().getNewGroupRoot(), groupDiff.get().getNewGroupRoot());
         assertEquals(expectedGroupDiff.get().getOriginalGroupRoot(), groupDiff.get().getOriginalGroupRoot());

diff --git a/src/test/java/org/jabref/logic/importer/fetcher/CiteSeerTest.java b/src/test/java/org/jabref/logic/importer/fetcher/CiteSeerTest.java
@@ -14,6 +14,7 @@
 import static org.junit.jupiter.api.Assertions.assertEquals;
 
 @FetcherTest
+@Disabled("CiteSeer is down as of 2022-07-18")
 class CiteSeerTest {
 
     private CiteSeer fetcher = new CiteSeer();

diff --git a/src/test/java/org/jabref/logic/importer/fetcher/JstorFetcherTest.java b/src/test/java/org/jabref/logic/importer/fetcher/JstorFetcherTest.java
@@ -1,12 +1,12 @@
 package org.jabref.logic.importer.fetcher;
 
-import java.io.IOException;
 import java.net.URL;
+import java.time.LocalDate;
+import java.time.format.DateTimeFormatter;
 import java.util.Collections;
 import java.util.List;
 import java.util.Optional;
 
-import org.jabref.logic.importer.FetcherException;
 import org.jabref.logic.importer.ImportFormatPreferences;
 import org.jabref.logic.importer.SearchBasedFetcher;
 import org.jabref.model.entry.BibEntry;
@@ -63,13 +63,19 @@ void searchByTitle() throws Exception {
     }
 
     @Test
-    void searchById() throws FetcherException {
+    void searchById() throws Exception {
+        bibEntry.setField(StandardField.URLDATE, LocalDate.now().format(DateTimeFormatter.ISO_DATE));
         assertEquals(Optional.of(bibEntry), fetcher.performSearchById("90002164"));
+    }
+
+    @Test
+    void searchByUrlUsingId() throws Exception {
+        doiEntry.setField(StandardField.URLDATE, LocalDate.now().format(DateTimeFormatter.ISO_DATE));
         assertEquals(Optional.of(doiEntry), fetcher.performSearchById("https://www.jstor.org/stable/10.1086/501484?seq=1"));
     }
 
     @Test
-    void fetchPDF() throws IOException, FetcherException {
+    void fetchPDF() throws Exception {
         Optional<URL> url = fetcher.findFullText(bibEntry);
         assertEquals(Optional.of(new URL("https://www.jstor.org/stable/pdf/90002164.pdf")), url);
     }