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Add UniqueID atom label type #1569

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merged 4 commits into from
Jan 4, 2024

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@ghutchis ghutchis commented Jan 3, 2024

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imitrichev and others added 4 commits December 23, 2023 22:09
If UniqueID label type is chosen, atoms are numbered from zero,
in contrast to index, where atoms are human-numbered from unity.

UniqueID mode is needed e.g. for chemists working with Orca quantum chemistry software. It is common to specify atoms in Orca input file (e.g., for a forming bond in a TS search), and Orca counts from zero.

Signed-off-by: Ivan Mitrichev <imitrichev@users.noreply.github.com>
add UniqueID variant to atom labels list in setupWidget() 

Signed-off-by: Ivan Mitrichev <imitrichev@users.noreply.github.com>
…into imitrichev-patch-1

Signed-off-by: Geoff Hutchison <geoff.hutchison@gmail.com>
Signed-off-by: Geoff Hutchison <geoff.hutchison@gmail.com>
@ghutchis ghutchis mentioned this pull request Jan 3, 2024
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avo-bot commented Jan 3, 2024

This pull request has been mentioned on Avogadro Discussion. There might be relevant details there:

https://discuss.avogadro.cc/t/january-2024-live-updates/5203/1

@@ -214,7 +207,7 @@
QObject::connect(residue, SIGNAL(currentIndexChanged(int)), slot,
SLOT(residueLabelType(int)));

residue->model()->sort(0, Qt::AscendingOrder);
// residue->model()->sort(0, Qt::AscendingOrder);

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@ghutchis ghutchis merged commit 0847df1 into OpenChemistry:master Jan 4, 2024
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@ghutchis ghutchis deleted the imitrichev-patch-1 branch January 4, 2024 00:06
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Here are the build results
Avogadro2.AppImage
macOS.dmg
Win64.exe
Artifacts will only be retained for 90 days.

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3 participants