Skip to content

Commit

Permalink
Adding dockerhub pull badges
Browse files Browse the repository at this point in the history
  • Loading branch information
skchronicles committed Jul 7, 2023
1 parent e07ed01 commit 80ac6ac
Show file tree
Hide file tree
Showing 2 changed files with 6 additions and 3 deletions.
4 changes: 2 additions & 2 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@

**_An awesome microRNA-sequencing pipeline_**

[![tests](https://github.com/OpenOmics/mir-seek/workflows/tests/badge.svg)](https://github.com/OpenOmics/mir-seek/actions/workflows/main.yaml) [![docs](https://github.com/OpenOmics/mir-seek/workflows/docs/badge.svg)](https://github.com/OpenOmics/mir-seek/actions/workflows/docs.yml) [![GitHub issues](https://img.shields.io/github/issues/OpenOmics/mir-seek?color=brightgreen)](https://github.com/OpenOmics/mir-seek/issues) [![GitHub license](https://img.shields.io/github/license/OpenOmics/mir-seek)](https://github.com/OpenOmics/mir-seek/blob/main/LICENSE)
[![Docker Pulls](https://img.shields.io/docker/pulls/skchronicles/mir-seek)](https://hub.docker.com/repository/docker/skchronicles/mir-seek) [![tests](https://github.com/OpenOmics/mir-seek/workflows/tests/badge.svg)](https://github.com/OpenOmics/mir-seek/actions/workflows/main.yaml) [![docs](https://github.com/OpenOmics/mir-seek/workflows/docs/badge.svg)](https://github.com/OpenOmics/mir-seek/actions/workflows/docs.yml) [![GitHub issues](https://img.shields.io/github/issues/OpenOmics/mir-seek?color=brightgreen)](https://github.com/OpenOmics/mir-seek/issues) [![GitHub license](https://img.shields.io/github/license/OpenOmics/mir-seek)](https://github.com/OpenOmics/mir-seek/blob/main/LICENSE)

<i>
This is the home of the pipeline, mir-seek. Its long-term goals: to accurately estimate microRNA expression, to perform quality-control, and to boldly discover known and novel miRNAs like no pipeline before!
Expand All @@ -19,7 +19,7 @@ The **`./mir-seek`** pipeline is composed several inter-related sub commands to
* [<code>mir-seek <b>run</b></code>](https://openomics.github.io/mir-seek/usage/run/): Run the mir-seek pipeline with your input files.
* [<code>mir-seek <b>unlock</b></code>](https://openomics.github.io/mir-seek/usage/unlock/): Unlocks a previous runs output directory.
* [<code>mir-seek <b>install</b></code>](https://openomics.github.io/mir-seek/usage/install/): Download reference files locally.
* [<code>mir-seek <b>cache</b></code>](https://openomics.github.io/mir-seek/usage/cache/): Cache remote resources locally, coming soon!
* [<code>mir-seek <b>cache</b></code>](https://openomics.github.io/mir-seek/usage/cache/): Cache software containers locally.

**mir-seek** is a comprehensive microRNA-sequencing pipeline. It relies on technologies like [Singularity<sup>1</sup>](https://singularity.lbl.gov/) to maintain the highest-level of reproducibility. The pipeline consists of a series of data processing and quality-control steps orchestrated by [Snakemake<sup>2</sup>](https://snakemake.readthedocs.io/en/stable/), a flexible and scalable workflow management system, to submit jobs to a cluster.

Expand Down
5 changes: 4 additions & 1 deletion docs/index.md
Original file line number Diff line number Diff line change
Expand Up @@ -2,7 +2,10 @@

<h1 style="font-size: 250%">mir-seek 🔬</h1>

<b><i>An awesome microRNA-sequencing pipeline</i></b><br>
<b><i>An awesome microRNA-sequencing pipeline</i></b><br>
<a href="https://hub.docker.com/repository/docker/skchronicles/mir-seek">
<img alt="Docker Pulls" src="https://img.shields.io/docker/pulls/skchronicles/mir-seek">
</a>
<a href="https://github.com/OpenOmics/mir-seek/actions/workflows/main.yaml">
<img alt="tests" src="https://github.com/OpenOmics/mir-seek/workflows/tests/badge.svg">
</a>
Expand Down

0 comments on commit 80ac6ac

Please sign in to comment.