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PMCC - Bioinformatics Core

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  1. janis janis Public

    [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows

    Python 41 13

  2. janis-core janis-core Public

    Core python modules for Janis Pipeline workflow assistant

    Common Workflow Language 4 9

  3. python-wdlgen python-wdlgen Public

    Python classes to loosely generate WDL

    Python 3 2

  4. janis-workshops janis-workshops Public

    Workshops for the Janis pipeline framework

    Python 3 4

  5. janis-bioinformatics janis-bioinformatics Public

    Repository of bioinformatics tools for the pipelines module

    Python 2 11

  6. janis-pipelines janis-pipelines Public

    Example pipelines with Janis

    Common Workflow Language 2 6

Repositories

Showing 10 of 19 repositories
  • nextflow-intro-workshop Public

    Introduction to Nextflow and Running nf-core Workflows Workshop

    PMCC-BioinformaticsCore/nextflow-intro-workshop’s past year of commit activity
    CSS 0 MIT 0 0 0 Updated Jun 23, 2024
  • dinoflow Public

    Nextflow workflow for MAC-seq

    PMCC-BioinformaticsCore/dinoflow’s past year of commit activity
    Groovy 0 MIT 1 0 0 Updated Feb 5, 2024
  • janis-core Public

    Core python modules for Janis Pipeline workflow assistant

    PMCC-BioinformaticsCore/janis-core’s past year of commit activity
    Common Workflow Language 4 GPL-3.0 9 23 8 Updated Dec 6, 2023
  • janis Public

    [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows

    PMCC-BioinformaticsCore/janis’s past year of commit activity
    Python 41 GPL-3.0 13 14 2 Updated Sep 17, 2023
  • janis-pipelines Public

    Example pipelines with Janis

    PMCC-BioinformaticsCore/janis-pipelines’s past year of commit activity
    Common Workflow Language 2 GPL-3.0 6 0 0 Updated Aug 30, 2023
  • janis-translate-examples Public

    Examples of using Janis to translate Galaxy & CWL workflows to Nextflow

    PMCC-BioinformaticsCore/janis-translate-examples’s past year of commit activity
    R 1 GPL-3.0 0 0 0 Updated Aug 24, 2023
  • janis-assistant Public

    A language and engine agnostic workflow runner for Janis

    PMCC-BioinformaticsCore/janis-assistant’s past year of commit activity
    Python 2 GPL-3.0 2 4 1 Updated Jul 12, 2023
  • python-wdlgen Public

    Python classes to loosely generate WDL

    PMCC-BioinformaticsCore/python-wdlgen’s past year of commit activity
    Python 3 GPL-3.0 2 1 2 Updated Jul 12, 2023
  • janis-bioinformatics Public

    Repository of bioinformatics tools for the pipelines module

    PMCC-BioinformaticsCore/janis-bioinformatics’s past year of commit activity
    Python 2 GPL-3.0 11 4 0 Updated Jul 12, 2023
  • janis-unix Public

    Unix tools and data types for Janis

    PMCC-BioinformaticsCore/janis-unix’s past year of commit activity
    Python 0 GPL-3.0 10 0 0 Updated Jun 13, 2023
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