Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

🧑‍💻 Define PatchPredictor #783

Merged
merged 140 commits into from
Sep 20, 2024
Merged

🧑‍💻 Define PatchPredictor #783

merged 140 commits into from
Sep 20, 2024

Commits on Nov 10, 2023

  1. Updating engine_abc to support WSI

    @AbishekRajVG
    AbishekRajVG committed Nov 10, 2023
    Configuration menu
    Copy the full SHA
    ccac220 View commit details
    Browse the repository at this point in the history

  2. ruff basic checks addressed

    @AbishekRajVG
    AbishekRajVG committed Nov 10, 2023
    Configuration menu
    Copy the full SHA
    ed4193c View commit details
    Browse the repository at this point in the history

  3. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
    @pre-commit-ci
    pre-commit-ci[bot] committed Nov 10, 2023
    Configuration menu
    Copy the full SHA
    bb99b58 View commit details
    Browse the repository at this point in the history

Commits on Nov 16, 2023

  1. Merge branch 'dev-define-engines-abc' into dev-update-engine-abc-wsi

    @shaneahmed
    shaneahmed committed Nov 16, 2023
    Configuration menu
    Copy the full SHA
    02c041a View commit details
    Browse the repository at this point in the history

  2. Merge branch 'dev-define-engines-abc' of https://github.com/TissueIma… 

    …geAnalytics/tiatoolbox into dev-update-engine-abc-wsi
    @AbishekRajVG
    AbishekRajVG committed Nov 16, 2023
    Configuration menu
    Copy the full SHA
    e06c29f View commit details
    Browse the repository at this point in the history

Commits on Nov 17, 2023

  1. EngineABC updated with WSI mode

    @AbishekRajVG
    AbishekRajVG committed Nov 17, 2023
    Configuration menu
    Copy the full SHA
    b354ed9 View commit details
    Browse the repository at this point in the history

  2. Merge branch 'dev-update-engine-abc-wsi' of https://github.com/Tissue… 

    …ImageAnalytics/tiatoolbox into dev-update-engine-abc-wsi
    @AbishekRajVG
    AbishekRajVG committed Nov 17, 2023
    Configuration menu
    Copy the full SHA
    45b7916 View commit details
    Browse the repository at this point in the history

  3. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
    @pre-commit-ci
    pre-commit-ci[bot] committed Nov 17, 2023
    Configuration menu
    Copy the full SHA
    3df8776 View commit details
    Browse the repository at this point in the history

  4. Updating final file_dict logic for WSI mode in EngineABC

    @AbishekRajVG
    AbishekRajVG committed Nov 17, 2023
    Configuration menu
    Copy the full SHA
    7eb36ee View commit details
    Browse the repository at this point in the history

  5. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
    @pre-commit-ci
    pre-commit-ci[bot] committed Nov 17, 2023
    Configuration menu
    Copy the full SHA
    cb48a53 View commit details
    Browse the repository at this point in the history

Commits on Nov 21, 2023

  1. Preprocess images unified as the set_dataloader() method

    @AbishekRajVG
    AbishekRajVG committed Nov 21, 2023
    Configuration menu
    Copy the full SHA
    6a10e46 View commit details
    Browse the repository at this point in the history

  2. Merge branch 'dev-update-engine-abc-wsi' of https://github.com/Tissue… 

    …ImageAnalytics/tiatoolbox into dev-update-engine-abc-wsi
    @AbishekRajVG
    AbishekRajVG committed Nov 21, 2023
    Configuration menu
    Copy the full SHA
    007742b View commit details
    Browse the repository at this point in the history

  3. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
    @pre-commit-ci
    pre-commit-ci[bot] committed Nov 21, 2023
    Configuration menu
    Copy the full SHA
    9073a03 View commit details
    Browse the repository at this point in the history

Commits on Nov 22, 2023

  1. Fix lint errors

    @AbishekRajVG
    AbishekRajVG committed Nov 22, 2023
    Configuration menu
    Copy the full SHA
    2e2e666 View commit details
    Browse the repository at this point in the history

  2. Merge branch 'dev-update-engine-abc-wsi' of https://github.com/Tissue… 

    …ImageAnalytics/tiatoolbox into dev-update-engine-abc-wsi
    @AbishekRajVG
    AbishekRajVG committed Nov 22, 2023
    Configuration menu
    Copy the full SHA
    f74bed7 View commit details
    Browse the repository at this point in the history

  3. Merge branch 'dev-define-engines-abc' into dev-update-engine-abc-wsi

    @shaneahmed
    shaneahmed committed Nov 22, 2023
    Configuration menu
    Copy the full SHA
    a93ca54 View commit details
    Browse the repository at this point in the history

  4. Merge branch 'dev-define-engines-abc' into dev-update-engine-abc-wsi

    @shaneahmed
    shaneahmed committed Nov 22, 2023
    Configuration menu
    Copy the full SHA
    055e9fc View commit details
    Browse the repository at this point in the history

Commits on Nov 23, 2023

  1. Improving Unit test coverage: Merge Predictions

    @AbishekRajVG
    AbishekRajVG committed Nov 23, 2023
    Configuration menu
    Copy the full SHA
    24fcff9 View commit details
    Browse the repository at this point in the history

  2. Merge branch 'dev-update-engine-abc-wsi' of https://github.com/Tissue… 

    …ImageAnalytics/tiatoolbox into dev-update-engine-abc-wsi
    @AbishekRajVG
    AbishekRajVG committed Nov 23, 2023
    Configuration menu
    Copy the full SHA
    626ca66 View commit details
    Browse the repository at this point in the history

Commits on Nov 24, 2023

  1. Improving unit test cases: ioconfig

    @AbishekRajVG
    AbishekRajVG committed Nov 24, 2023
    Configuration menu
    Copy the full SHA
    69d79f1 View commit details
    Browse the repository at this point in the history

  2. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
    @pre-commit-ci
    pre-commit-ci[bot] committed Nov 24, 2023
    Configuration menu
    Copy the full SHA
    c551097 View commit details
    Browse the repository at this point in the history

  3. Improving unit test coverage: wsi_predictor_merge_predictions

    @AbishekRajVG
    AbishekRajVG committed Nov 24, 2023
    Configuration menu
    Copy the full SHA
    5327066 View commit details
    Browse the repository at this point in the history

  4. Merge branch 'dev-update-engine-abc-wsi' of https://github.com/Tissue… 

    …ImageAnalytics/tiatoolbox into dev-update-engine-abc-wsi
    @AbishekRajVG
    AbishekRajVG committed Nov 24, 2023
    Configuration menu
    Copy the full SHA
    5eb553d View commit details
    Browse the repository at this point in the history

Commits on Nov 27, 2023

  1. Improve EngineABC's post_process_wsi to support Annotation Store

    @AbishekRajVG
    AbishekRajVG committed Nov 27, 2023
    Configuration menu
    Copy the full SHA
    456fb60 View commit details
    Browse the repository at this point in the history

  2. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
    @pre-commit-ci
    pre-commit-ci[bot] committed Nov 27, 2023
    Configuration menu
    Copy the full SHA
    b316c16 View commit details
    Browse the repository at this point in the history

  3. Reverting classes_predicted and updating class_dict in tiatoolbox.uti… 

    …ls.misc.dict_to_store() method
    @AbishekRajVG
    AbishekRajVG committed Nov 27, 2023
    Configuration menu
    Copy the full SHA
    6fcce1c View commit details
    Browse the repository at this point in the history

  4. Merge Remote dev-update-engine-abc-wsi branch to local

    @AbishekRajVG
    AbishekRajVG committed Nov 27, 2023
    Configuration menu
    Copy the full SHA
    20b91e8 View commit details
    Browse the repository at this point in the history

  5. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
    @pre-commit-ci
    pre-commit-ci[bot] committed Nov 27, 2023
    Configuration menu
    Copy the full SHA
    a5a44e6 View commit details
    Browse the repository at this point in the history

Commits on Nov 30, 2023

  1. Merge branch 'dev-define-engines-abc' into dev-update-engine-abc-wsi

    @shaneahmed
    shaneahmed committed Nov 30, 2023
    Configuration menu
    Copy the full SHA
    18e510f View commit details
    Browse the repository at this point in the history

  2. Update mypy-type-check.yml

    @shaneahmed
    shaneahmed committed Nov 30, 2023
    Configuration menu
    Copy the full SHA
    f6604f4 View commit details
    Browse the repository at this point in the history

Commits on Dec 1, 2023

  1. Improving Zarr and Annotation Store tests in test_engine_abc

    @AbishekRajVG
    AbishekRajVG committed Dec 1, 2023
    Configuration menu
    Copy the full SHA
    d8e7cc2 View commit details
    Browse the repository at this point in the history

  2. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
    @pre-commit-ci
    pre-commit-ci[bot] committed Dec 1, 2023
    Configuration menu
    Copy the full SHA
    1096c31 View commit details
    Browse the repository at this point in the history

  3. Fix lint error

    @AbishekRajVG
    AbishekRajVG committed Dec 1, 2023
    Configuration menu
    Copy the full SHA
    cadad70 View commit details
    Browse the repository at this point in the history

  4. Merge branch 'dev-update-engine-abc-wsi' of https://github.com/Tissue… 

    …ImageAnalytics/tiatoolbox into dev-update-engine-abc-wsi
    @AbishekRajVG
    AbishekRajVG committed Dec 1, 2023
    Configuration menu
    Copy the full SHA
    89587a2 View commit details
    Browse the repository at this point in the history

  5. Adding patch_mode argument to the engine_abc.get_dataloader() method

    @AbishekRajVG
    AbishekRajVG committed Dec 1, 2023
    Configuration menu
    Copy the full SHA
    2173c46 View commit details
    Browse the repository at this point in the history

  6. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
    @pre-commit-ci
    pre-commit-ci[bot] committed Dec 1, 2023
    Configuration menu
    Copy the full SHA
    dc5cdee View commit details
    Browse the repository at this point in the history

Commits on Dec 15, 2023

  1. Reducing complexity in EngineABC as per review comments

    @AbishekRajVG
    AbishekRajVG committed Dec 15, 2023
    Configuration menu
    Copy the full SHA
    5968b98 View commit details
    Browse the repository at this point in the history

  2. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
    @pre-commit-ci
    pre-commit-ci[bot] committed Dec 15, 2023
    Configuration menu
    Copy the full SHA
    d2ed5e2 View commit details
    Browse the repository at this point in the history

Commits on Dec 18, 2023

  1. Merge branch 'dev-define-engines-abc' into dev-update-engine-abc-wsi

    @shaneahmed
    shaneahmed committed Dec 18, 2023
    Configuration menu
    Copy the full SHA
    3528f7c View commit details
    Browse the repository at this point in the history

  2. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
    @pre-commit-ci
    pre-commit-ci[bot] committed Dec 18, 2023
    Configuration menu
    Copy the full SHA
    5a293b1 View commit details
    Browse the repository at this point in the history

Commits on Dec 31, 2023

  1. Replacing tolist() with Zarr groups

    @AbishekRajVG
    AbishekRajVG committed Dec 31, 2023
    Configuration menu
    Copy the full SHA
    9344c06 View commit details
    Browse the repository at this point in the history

  2. Merge branch 'dev-update-engine-abc-wsi' of https://github.com/Tissue… 

    …ImageAnalytics/tiatoolbox into dev-update-engine-abc-wsi
    @AbishekRajVG
    AbishekRajVG committed Dec 31, 2023
    Configuration menu
    Copy the full SHA
    82ecb35 View commit details
    Browse the repository at this point in the history

  3. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
    @pre-commit-ci
    pre-commit-ci[bot] committed Dec 31, 2023
    Configuration menu
    Copy the full SHA
    6a8f070 View commit details
    Browse the repository at this point in the history

Commits on Jan 12, 2024

  1. 🧪 Remove failing test temporarily.

    @shaneahmed
    shaneahmed committed Jan 12, 2024
    Configuration menu
    Copy the full SHA
    07b8d3a View commit details
    Browse the repository at this point in the history

  2. Merge branch 'dev-define-engines-abc' into dev-update-engine-abc-wsi

    @shaneahmed
    shaneahmed committed Jan 12, 2024
    Configuration menu
    Copy the full SHA
    57162d2 View commit details
    Browse the repository at this point in the history

Commits on Jan 19, 2024

  1. Merge branch 'dev-define-engines-abc' into dev-update-engine-abc-wsi

    @shaneahmed
    shaneahmed committed Jan 19, 2024
    Configuration menu
    Copy the full SHA
    f9839db View commit details
    Browse the repository at this point in the history

Commits on Jan 26, 2024

  1. Merge branch 'dev-define-engines-abc' into dev-update-engine-abc-wsi

    @shaneahmed
    shaneahmed committed Jan 26, 2024
    Configuration menu
    Copy the full SHA
    c043032 View commit details
    Browse the repository at this point in the history

Commits on Feb 2, 2024

  1. Merge branch 'dev-define-engines-abc' into dev-update-engine-abc-wsi

    @shaneahmed
    shaneahmed committed Feb 2, 2024
    Configuration menu
    Copy the full SHA
    702c558 View commit details
    Browse the repository at this point in the history

  2. Merge branch 'dev-define-engines-abc' into dev-update-engine-abc-wsi

    @shaneahmed
    shaneahmed committed Feb 2, 2024
    Configuration menu
    Copy the full SHA
    6a360ad View commit details
    Browse the repository at this point in the history

Commits on Mar 20, 2024

  1. 📝 Create temporary files. 

    Signed-off-by: Shan E Ahmed Raza <13048456+shaneahmed@users.noreply.github.com>
    @shaneahmed
    shaneahmed committed Mar 20, 2024
    Configuration menu
    Copy the full SHA
    00f6d3b View commit details
    Browse the repository at this point in the history

  2. 🔀 Merge dev-define-engines-abc into dev-define-patchpredictor 

    Signed-off-by: Shan E Ahmed Raza <13048456+shaneahmed@users.noreply.github.com>
    @shaneahmed
    shaneahmed committed Mar 20, 2024
    Configuration menu
    Copy the full SHA
    abe8aab View commit details
    Browse the repository at this point in the history

  3. Merge remote-tracking branch 'origin/dev-define-engines-abc' into dev… 

    …-define-patchpredictor
    @shaneahmed
    shaneahmed committed Mar 20, 2024
    Configuration menu
    Copy the full SHA
    71a3e62 View commit details
    Browse the repository at this point in the history

Commits on Apr 26, 2024

  1. Merge remote-tracking branch 'refs/remotes/origin/dev-define-engines-… 

    …abc' into dev-define-patchpredictor

# Conflicts:
#	tiatoolbox/models/engine/engine_abc.py
#	tiatoolbox/utils/misc.py
    @shaneahmed
    shaneahmed committed Apr 26, 2024
    Configuration menu
    Copy the full SHA
    b278a13 View commit details
    Browse the repository at this point in the history

Commits on Apr 29, 2024

  1. Merge branch 'dev-define-engines-abc' into dev-define-patchpredictor

    @shaneahmed
    shaneahmed committed Apr 29, 2024
    Configuration menu
    Copy the full SHA
    d6afe62 View commit details
    Browse the repository at this point in the history

Commits on May 3, 2024

  1. 🔨 Add script for new predictor engine

    @shaneahmed
    shaneahmed committed May 3, 2024
    Configuration menu
    Copy the full SHA
    de58f04 View commit details
    Browse the repository at this point in the history

  2. 🔨 Add script for new predictor engine

    @shaneahmed
    shaneahmed committed May 3, 2024
    Configuration menu
    Copy the full SHA
    dbdbf7a View commit details
    Browse the repository at this point in the history

  3. 🔨 Update script for new predictor engine

    @shaneahmed
    shaneahmed committed May 3, 2024
    Configuration menu
    Copy the full SHA
    e2abc0e View commit details
    Browse the repository at this point in the history

  4. 🔨 Update script for new predictor engine

    @shaneahmed
    shaneahmed committed May 3, 2024
    Configuration menu
    Copy the full SHA
    9ef5b54 View commit details
    Browse the repository at this point in the history

  5. 🔨 Update script for new predictor engine

    @shaneahmed
    shaneahmed committed May 3, 2024
    Configuration menu
    Copy the full SHA
    ea48e1d View commit details
    Browse the repository at this point in the history

  6. 🔥 Remove redundant files.

    @shaneahmed
    shaneahmed committed May 3, 2024
    Configuration menu
    Copy the full SHA
    14585c1 View commit details
    Browse the repository at this point in the history

Commits on May 13, 2024

  1. 🔨 Update cache_mode to True in WSI mode.

    @shaneahmed
    shaneahmed committed May 13, 2024
    Configuration menu
    Copy the full SHA
    d2b7a1a View commit details
    Browse the repository at this point in the history

  2. 🔨 Add _run_wsi_mode to engine_abc.

    @shaneahmed
    shaneahmed committed May 13, 2024
    Configuration menu
    Copy the full SHA
    03932b0 View commit details
    Browse the repository at this point in the history

  3. 🔨 Add save_path for individual WSIs.

    @shaneahmed
    shaneahmed committed May 13, 2024
    Configuration menu
    Copy the full SHA
    1b01dda View commit details
    Browse the repository at this point in the history

  4. ✅ Update tests

    @shaneahmed
    shaneahmed committed May 13, 2024
    Configuration menu
    Copy the full SHA
    f2bbb52 View commit details
    Browse the repository at this point in the history

  5. Merge branch 'dev-define-engines-abc' into dev-define-patchpredictor

    @shaneahmed
    shaneahmed committed May 13, 2024
    Configuration menu
    Copy the full SHA
    f066e19 View commit details
    Browse the repository at this point in the history

  6. 🧑‍💻 Add dummy tests. 

    Signed-off-by: Shan E Ahmed Raza <13048456+shaneahmed@users.noreply.github.com>
    @shaneahmed
    shaneahmed committed May 13, 2024
    Configuration menu
    Copy the full SHA
    59198e8 View commit details
    Browse the repository at this point in the history

  7. 🧑‍💻 Add dummy tests. 

    Signed-off-by: Shan E Ahmed Raza <13048456+shaneahmed@users.noreply.github.com>
    @shaneahmed
    shaneahmed committed May 13, 2024
    Configuration menu
    Copy the full SHA
    72d4b8d View commit details
    Browse the repository at this point in the history

  8. 🔨 Add post_process_wsi as abstractmethod. 

    Signed-off-by: Shan E Ahmed Raza <13048456+shaneahmed@users.noreply.github.com>
    @shaneahmed
    shaneahmed committed May 13, 2024
    Configuration menu
    Copy the full SHA
    a4d5d5b View commit details
    Browse the repository at this point in the history

  9. 🧪 Update test_io_config_delegation 

    Signed-off-by: Shan E Ahmed Raza <13048456+shaneahmed@users.noreply.github.com>
    @shaneahmed
    shaneahmed committed May 13, 2024
    Configuration menu
    Copy the full SHA
    bc2054c View commit details
    Browse the repository at this point in the history

  10. 🧪 Update test_io_config_delegation 

    Signed-off-by: Shan E Ahmed Raza <13048456+shaneahmed@users.noreply.github.com>
    @shaneahmed
    shaneahmed committed May 13, 2024
    Configuration menu
    Copy the full SHA
    63765e8 View commit details
    Browse the repository at this point in the history

  11. 🧪 Update test_io_config_delegation 

    Signed-off-by: Shan E Ahmed Raza <13048456+shaneahmed@users.noreply.github.com>
    @shaneahmed
    shaneahmed committed May 13, 2024
    Configuration menu
    Copy the full SHA
    06d283a View commit details
    Browse the repository at this point in the history

  12. ✅ Add test_io_config_delegation

    @shaneahmed
    shaneahmed committed May 13, 2024
    Configuration menu
    Copy the full SHA
    a1ffd07 View commit details
    Browse the repository at this point in the history

  13. ✅ Fix first two tests.

    @shaneahmed
    shaneahmed committed May 13, 2024
    Configuration menu
    Copy the full SHA
    400bfbf View commit details
    Browse the repository at this point in the history

  14. 🧪 Fix tests. 

    Signed-off-by: Shan E Ahmed Raza <13048456+shaneahmed@users.noreply.github.com>
    @shaneahmed
    shaneahmed committed May 13, 2024
    Configuration menu
    Copy the full SHA
    707a547 View commit details
    Browse the repository at this point in the history

Commits on May 14, 2024

  1. Merge branch 'dev-define-engines-abc' into dev-define-patchpredictor

    @shaneahmed
    shaneahmed committed May 14, 2024
    Configuration menu
    Copy the full SHA
    73c1ab1 View commit details
    Browse the repository at this point in the history

  2. ✅ Add tests using multiple WSIs to check if the results are the same … 

    …irrespective of the input format.
    @shaneahmed
    shaneahmed committed May 14, 2024
    Configuration menu
    Copy the full SHA
    0288ddb View commit details
    Browse the repository at this point in the history

  3. ♻️ Move test_patch_predictor_new to test_patch_predictor

    @shaneahmed
    shaneahmed committed May 14, 2024
    Configuration menu
    Copy the full SHA
    7f41803 View commit details
    Browse the repository at this point in the history

  4. Merge branch 'refs/heads/dev-define-engines-abc' into dev-define-patc… 

    …hpredictor

# Conflicts:
#	tests/engines/test_patch_predictor.py
    @shaneahmed
    shaneahmed committed May 14, 2024
    Configuration menu
    Copy the full SHA
    f94a241 View commit details
    Browse the repository at this point in the history

  5. ⏪ Restore github workflow

    @shaneahmed
    shaneahmed committed May 14, 2024
    Configuration menu
    Copy the full SHA
    be5d7d7 View commit details
    Browse the repository at this point in the history

  6. ✅ Fix test_patch_predictor_kather100k_output

    @shaneahmed
    shaneahmed committed May 14, 2024
    Configuration menu
    Copy the full SHA
    0f071ef View commit details
    Browse the repository at this point in the history

  7. 🔥 Remove redundant test for PCAM models.

    @shaneahmed
    shaneahmed committed May 14, 2024
    Configuration menu
    Copy the full SHA
    e0f4b6a View commit details
    Browse the repository at this point in the history

  8. 🔥 Remove redundant test for single file with mask.

    @shaneahmed
    shaneahmed committed May 14, 2024
    Configuration menu
    Copy the full SHA
    b452067 View commit details
    Browse the repository at this point in the history

Commits on May 15, 2024

  1. ♻️ Update cli code for patch_predictor.py

    @shaneahmed
    shaneahmed committed May 15, 2024
    Configuration menu
    Copy the full SHA
    ec831fb View commit details
    Browse the repository at this point in the history

  2. ✅ Fix cli tests

    @shaneahmed
    shaneahmed committed May 15, 2024
    Configuration menu
    Copy the full SHA
    dad0a98 View commit details
    Browse the repository at this point in the history

Commits on Jun 3, 2024

  1. Merge branch 'dev-define-engines-abc' into dev-define-patchpredictor

    @shaneahmed
    shaneahmed committed Jun 3, 2024
    Configuration menu
    Copy the full SHA
    323e0a4 View commit details
    Browse the repository at this point in the history

Commits on Jun 6, 2024

  1. ✅ Add check for output_type

    @shaneahmed
    shaneahmed committed Jun 6, 2024
    Configuration menu
    Copy the full SHA
    5693d4b View commit details
    Browse the repository at this point in the history

  2. ♻️ Use processed predictions instead of raw_ouptut for save_wsi_output

    @shaneahmed
    shaneahmed committed Jun 6, 2024
    Configuration menu
    Copy the full SHA
    38aa74e View commit details
    Browse the repository at this point in the history

  3. ✅ Fix error type

    @shaneahmed
    shaneahmed committed Jun 6, 2024
    Configuration menu
    Copy the full SHA
    3e04b2f View commit details
    Browse the repository at this point in the history

  4. ✅ Add tests for wsi mode for zarr

    @shaneahmed
    shaneahmed committed Jun 6, 2024
    Configuration menu
    Copy the full SHA
    e24d009 View commit details
    Browse the repository at this point in the history

  5. 📌 Pin pytest version. 

    Signed-off-by: Shan E Ahmed Raza <13048456+shaneahmed@users.noreply.github.com>
    @shaneahmed
    shaneahmed committed Jun 6, 2024
    Configuration menu
    Copy the full SHA
    687cb94 View commit details
    Browse the repository at this point in the history

  6. 📌 Pin pytest version to less than 8.2.2 

    Signed-off-by: Shan E Ahmed Raza <13048456+shaneahmed@users.noreply.github.com>
    @shaneahmed
    shaneahmed committed Jun 6, 2024
    Configuration menu
    Copy the full SHA
    4b417e1 View commit details
    Browse the repository at this point in the history

  7. 📌 Pin pytest version to less than 8.2.2 

    Signed-off-by: Shan E Ahmed Raza <13048456+shaneahmed@users.noreply.github.com>
    @shaneahmed
    shaneahmed committed Jun 6, 2024
    Configuration menu
    Copy the full SHA
    7e95242 View commit details
    Browse the repository at this point in the history

  8. 📌 Pin pytest version to less than 8.2.2 

    Signed-off-by: Shan E Ahmed Raza <13048456+shaneahmed@users.noreply.github.com>
    @shaneahmed
    shaneahmed committed Jun 6, 2024
    Configuration menu
    Copy the full SHA
    b353e5f View commit details
    Browse the repository at this point in the history

  9. 🔥 Remove failing test 

    Signed-off-by: Shan E Ahmed Raza <13048456+shaneahmed@users.noreply.github.com>
    @shaneahmed
    shaneahmed committed Jun 6, 2024
    Configuration menu
    Copy the full SHA
    79f9ad5 View commit details
    Browse the repository at this point in the history

Commits on Jun 7, 2024

  1. ⏪ Revert changes to test_annotation_stores.py

    @shaneahmed
    shaneahmed committed Jun 7, 2024
    Configuration menu
    Copy the full SHA
    7e5aa45 View commit details
    Browse the repository at this point in the history

  2. ♻️ Fix duplicate filter to avoid caplog errors.

    @shaneahmed
    shaneahmed committed Jun 7, 2024
    Configuration menu
    Copy the full SHA
    ea7f45b View commit details
    Browse the repository at this point in the history

  3. ♻️ Remove duplicate filter to avoid caplog errors.

    @shaneahmed
    shaneahmed committed Jun 7, 2024
    Configuration menu
    Copy the full SHA
    e7c92bd View commit details
    Browse the repository at this point in the history

  4. Merge branch 'dev-define-engines-abc' into dev-define-patchpredictor

    @shaneahmed
    shaneahmed committed Jun 7, 2024
    Configuration menu
    Copy the full SHA
    f6a7f96 View commit details
    Browse the repository at this point in the history

Commits on Jun 12, 2024

  1. Merge branch 'dev-define-engines-abc' into dev-define-patchpredictor

    @shaneahmed
    shaneahmed committed Jun 12, 2024
    Configuration menu
    Copy the full SHA
    f373f47 View commit details
    Browse the repository at this point in the history

Commits on Jun 13, 2024

  1. ♻️ Replace old patch_predictor

    @shaneahmed
    shaneahmed committed Jun 13, 2024
    Configuration menu
    Copy the full SHA
    97773eb View commit details
    Browse the repository at this point in the history

  2. 🐛 Fix mypy checks

    @shaneahmed
    shaneahmed committed Jun 13, 2024
    Configuration menu
    Copy the full SHA
    865542b View commit details
    Browse the repository at this point in the history

  3. Merge remote-tracking branch 'origin/dev-define-patchpredictor' into … 

    …dev-define-patchpredictor
    @shaneahmed
    shaneahmed committed Jun 13, 2024
    Configuration menu
    Copy the full SHA
    141b61d View commit details
    Browse the repository at this point in the history

Commits on Jun 14, 2024

  1. 🧪 Add test for AnnotationStore

    @shaneahmed
    shaneahmed committed Jun 14, 2024
    Configuration menu
    Copy the full SHA
    17d4fdd View commit details
    Browse the repository at this point in the history

Commits on Jun 18, 2024

  1. Merge branch 'dev-define-engines-abc' into dev-define-patchpredictor

    @shaneahmed
    shaneahmed committed Jun 18, 2024
    Configuration menu
    Copy the full SHA
    8641a37 View commit details
    Browse the repository at this point in the history

Commits on Jun 20, 2024

  1. ♻️ Use "probabilities" key for raw output of models.

    @shaneahmed
    shaneahmed committed Jun 20, 2024
    Configuration menu
    Copy the full SHA
    7041051 View commit details
    Browse the repository at this point in the history

  2. Merge remote-tracking branch 'origin/dev-define-patchpredictor' into … 

    …dev-define-patchpredictor
    @shaneahmed
    shaneahmed committed Jun 20, 2024
    Configuration menu
    Copy the full SHA
    b870293 View commit details
    Browse the repository at this point in the history

  3. ♻️ Use "probabilities" key for raw output of models.

    @shaneahmed
    shaneahmed committed Jun 20, 2024
    Configuration menu
    Copy the full SHA
    c3cba81 View commit details
    Browse the repository at this point in the history

  4. ⏪ Revert unwanted changes.

    @shaneahmed
    shaneahmed committed Jun 20, 2024
    Configuration menu
    Copy the full SHA
    224dacb View commit details
    Browse the repository at this point in the history

  5. ✅ Add tests for output types in cli

    @shaneahmed
    shaneahmed committed Jun 20, 2024
    Configuration menu
    Copy the full SHA
    34ceeca View commit details
    Browse the repository at this point in the history

Commits on Jun 25, 2024

  1. Merge branch 'dev-define-engines-abc' into dev-define-patchpredictor

    @shaneahmed
    shaneahmed committed Jun 25, 2024
    Configuration menu
    Copy the full SHA
    944e843 View commit details
    Browse the repository at this point in the history

  2. ⏪ Add duplicate filter.

    @shaneahmed
    shaneahmed committed Jun 25, 2024
    Configuration menu
    Copy the full SHA
    a9bc22f View commit details
    Browse the repository at this point in the history

  3. 🐛 Fix tests using duplicate filters.

    @shaneahmed
    shaneahmed committed Jun 25, 2024
    Configuration menu
    Copy the full SHA
    7eed2f1 View commit details
    Browse the repository at this point in the history

  4. 🐛 Fix tests using duplicate filters.

    @shaneahmed
    shaneahmed committed Jun 25, 2024
    Configuration menu
    Copy the full SHA
    347c279 View commit details
    Browse the repository at this point in the history

Commits on Jul 4, 2024

  1. ♻️ Address review comments

    @shaneahmed
    shaneahmed committed Jul 4, 2024
    Configuration menu
    Copy the full SHA
    0d1dda9 View commit details
    Browse the repository at this point in the history

Commits on Jul 5, 2024

  1. Merge branch 'dev-define-engines-abc' into dev-define-patchpredictor

    @shaneahmed
    shaneahmed committed Jul 5, 2024
    Configuration menu
    Copy the full SHA
    906c2ae View commit details
    Browse the repository at this point in the history

  2. Merge branch 'dev-define-engines-abc' into dev-define-patchpredictor

    @shaneahmed
    shaneahmed committed Jul 5, 2024
    Configuration menu
    Copy the full SHA
    059b864 View commit details
    Browse the repository at this point in the history

  3. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
    @pre-commit-ci
    pre-commit-ci[bot] committed Jul 5, 2024
    Configuration menu
    Copy the full SHA
    d02c308 View commit details
    Browse the repository at this point in the history

Commits on Jul 8, 2024

  1. Merge branch 'dev-define-engines-abc' into dev-define-patchpredictor

    @shaneahmed
    shaneahmed committed Jul 8, 2024
    Configuration menu
    Copy the full SHA
    355dbff View commit details
    Browse the repository at this point in the history

Commits on Jul 10, 2024

  1. Merge branch 'dev-define-engines-abc' into dev-define-patchpredictor

    @shaneahmed
    shaneahmed committed Jul 10, 2024
    Configuration menu
    Copy the full SHA
    5cfef61 View commit details
    Browse the repository at this point in the history

Commits on Jul 12, 2024

  1. 🐛 Fix bug related to default values of resolution and units.

    @shaneahmed
    shaneahmed committed Jul 12, 2024
    Configuration menu
    Copy the full SHA
    5085035 View commit details
    Browse the repository at this point in the history

Commits on Jul 17, 2024

  1. ✅ Fix test 

    Signed-off-by: Shan E Ahmed Raza <13048456+shaneahmed@users.noreply.github.com>
    @shaneahmed
    shaneahmed committed Jul 17, 2024
    Configuration menu
    Copy the full SHA
    936eda7 View commit details
    Browse the repository at this point in the history

  2. Merge branch 'dev-define-engines-abc' into dev-define-patchpredictor

    @shaneahmed
    shaneahmed committed Jul 17, 2024
    Configuration menu
    Copy the full SHA
    0b25bec View commit details
    Browse the repository at this point in the history

  3. ✅ Add test for baseline 

    Signed-off-by: Shan E Ahmed Raza <13048456+shaneahmed@users.noreply.github.com>
    @shaneahmed
    shaneahmed committed Jul 17, 2024
    Configuration menu
    Copy the full SHA
    574fed2 View commit details
    Browse the repository at this point in the history

  4. 🐛 Fix class predictions bug 

    Signed-off-by: Shan E Ahmed Raza <13048456+shaneahmed@users.noreply.github.com>
    @shaneahmed
    shaneahmed committed Jul 17, 2024
    Configuration menu
    Copy the full SHA
    b91da56 View commit details
    Browse the repository at this point in the history

Commits on Jul 18, 2024

  1. 📝 Update docstring 

    Signed-off-by: Shan E Ahmed Raza <13048456+shaneahmed@users.noreply.github.com>
    @shaneahmed
    shaneahmed committed Jul 18, 2024
    Configuration menu
    Copy the full SHA
    45a339b View commit details
    Browse the repository at this point in the history

Commits on Aug 9, 2024

  1. Merge branch 'dev-define-engines-abc' into dev-define-patchpredictor

    @shaneahmed
    shaneahmed committed Aug 9, 2024
    Configuration menu
    Copy the full SHA
    055f86b View commit details
    Browse the repository at this point in the history

Commits on Aug 15, 2024

  1. Merge branch 'dev-define-engines-abc' into dev-define-patchpredictor

    @shaneahmed
    shaneahmed committed Aug 15, 2024
    Configuration menu
    Copy the full SHA
    28515c5 View commit details
    Browse the repository at this point in the history

  2. Merge branch 'dev-define-engines-abc' into dev-define-patchpredictor

    @shaneahmed
    shaneahmed committed Aug 15, 2024
    Configuration menu
    Copy the full SHA
    d773206 View commit details
    Browse the repository at this point in the history

  3. 🐛 Fix output path for annotationstore output.

    @shaneahmed
    shaneahmed committed Aug 15, 2024
    Configuration menu
    Copy the full SHA
    20362ef View commit details
    Browse the repository at this point in the history

  4. 🐛 Fix scale_factor.

    @shaneahmed
    shaneahmed committed Aug 15, 2024
    1 Configuration menu
    Copy the full SHA
    da0ce4f View commit details
    Browse the repository at this point in the history

Commits on Aug 16, 2024

  1. 🎨 Update code structure for dataloader_units

    @shaneahmed
    shaneahmed committed Aug 16, 2024
    Configuration menu
    Copy the full SHA
    606a2c0 View commit details
    Browse the repository at this point in the history

Commits on Aug 20, 2024

  1. Merge branch 'dev-define-engines-abc' into dev-define-patchpredictor

    @shaneahmed
    shaneahmed committed Aug 20, 2024
    Configuration menu
    Copy the full SHA
    dd712ad View commit details
    Browse the repository at this point in the history

Commits on Aug 23, 2024

  1. ✨ Add support for "power" in "scale_factor". 

    Signed-off-by: Shan E Ahmed Raza <13048456+shaneahmed@users.noreply.github.com>
    @shaneahmed
    shaneahmed committed Aug 23, 2024
    Configuration menu
    Copy the full SHA
    fea5be9 View commit details
    Browse the repository at this point in the history

  2. 🐛 Use staticmethod. 

    Signed-off-by: Shan E Ahmed Raza <13048456+shaneahmed@users.noreply.github.com>
    @shaneahmed
    shaneahmed committed Aug 23, 2024
    Configuration menu
    Copy the full SHA
    624e46a View commit details
    Browse the repository at this point in the history

Commits on Aug 25, 2024

  1. Merge branch 'dev-define-engines-abc' into dev-define-patchpredictor

    @shaneahmed
    shaneahmed committed Aug 25, 2024
    Configuration menu
    Copy the full SHA
    9fe0aaa View commit details
    Browse the repository at this point in the history

Commits on Aug 28, 2024

  1. Merge branch 'refs/heads/dev-define-engines-abc' into dev-define-patc… 

    …hpredictor
    @shaneahmed
    shaneahmed committed Aug 28, 2024
    Configuration menu
    Copy the full SHA
    94c2969 View commit details
    Browse the repository at this point in the history

  2. ✅ Add test for objective power. 

    Signed-off-by: Shan E Ahmed Raza <13048456+shaneahmed@users.noreply.github.com>
    @shaneahmed
    shaneahmed committed Aug 28, 2024
    Configuration menu
    Copy the full SHA
    e4e6f22 View commit details
    Browse the repository at this point in the history

Commits on Sep 18, 2024

  1. Merge branch 'dev-define-engines-abc' into dev-define-patchpredictor

    @shaneahmed
    shaneahmed committed Sep 18, 2024
    Configuration menu
    Copy the full SHA
    f8c65fb View commit details
    Browse the repository at this point in the history

Commits on Sep 19, 2024

  1. Merge branch 'dev-define-engines-abc' into dev-define-patchpredictor

    @shaneahmed
    shaneahmed committed Sep 19, 2024
    Configuration menu
    Copy the full SHA
    5c6d340 View commit details
    Browse the repository at this point in the history

Commits on Sep 20, 2024

  1. [skip ci] 📝 Update docstring

    @shaneahmed
    shaneahmed committed Sep 20, 2024
    Configuration menu
    Copy the full SHA
    a513161 View commit details
    Browse the repository at this point in the history