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ChinaMethAtlas

A comprehensive DNA methylation atlas for the Chinese population through nanopore long-read sequencing of 106 individuals

ChinaMethAtlas is a project focused on the analysis of DNA methylation data for the Chinese population. The project aims to provide tools and methods for the preprocessing, analysis, and visualization of methylation data. This repository contains scripts for data processing and visulization to facilitate methylation studies.

Feature

  • Data preprocessing scripts
  • Data analysis methods
  • Visulization tools for results

Directory Structure

  • data/: Contains raw and processed data files
  • scripts/: Contains scripts for data processing and analysis
  • plots/: Contains generated plots and visualizations
  • docs/: Documentation and Usage instructions

Installation and Usage

Clone the Repository

git clone https://github.com/YLeeHIT/ChinaMethAtlas.git
cd ChinaMethAtlas

Usage Example

  1. Data Preprocessing:

    python scripts/data_preprocessing.py

  2. Data Analysis:

    bash scripts/data_analysis.sh

  3. Results Visulization:

    Rscript scripts/plot_results.R

License

This project is licensed under the MIT License. See the LICENSE file for more details.

Citation

If you use ChinaMethAtlas in your research, please cite the following paper: A Comprehensive Tool for DNA Methylation Analysis in the Chinese population.

Contact

For any questions, please contact email