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# open an interactive | ||
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$ interactive | ||
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# enter conda environment | ||
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$ conda activate nextflow-env | ||
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# check the paths for input and output in the boostdm.nf script | ||
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# check the paths for input, cache, output in the nextflow.config script | ||
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# check the settings in config/bbglab.conf | ||
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# run nextflow command | ||
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$ nextflow run <run_name>.nf -profile bbglab -resume |
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boostdm { | ||
bootstrapSplits = 50 | ||
xsThresh = 0.8 | ||
cvFraction = 0.3 | ||
minimumRows = 30 | ||
minimumFscore = 0.5 | ||
} |
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