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NEW: boostDM-CH pipeline
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koszulordie committed Nov 10, 2023
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17 changes: 17 additions & 0 deletions HOWTO
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# open an interactive

$ interactive

# enter conda environment

$ conda activate nextflow-env

# check the paths for input and output in the boostdm.nf script

# check the paths for input, cache, output in the nextflow.config script

# check the settings in config/bbglab.conf

# run nextflow command

$ nextflow run <run_name>.nf -profile bbglab -resume
7 changes: 7 additions & 0 deletions boostdm.conf
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boostdm {
bootstrapSplits = 50
xsThresh = 0.8
cvFraction = 0.3
minimumRows = 30
minimumFscore = 0.5
}
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