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@biocore

biocore

Collaboratively developed bioinformatics software.

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  1. gneiss gneiss Public

    compositional data analysis toolbox

    Jupyter Notebook 55 28

Repositories

Showing 10 of 88 repositories
  • microsetta-interface Public

    The Microsetta participant facing user interface

    biocore/microsetta-interface’s past year of commit activity
    Jinja 1 BSD-3-Clause 17 44 1 Updated Sep 13, 2024
  • mg-scripts Public

    Knight Lab internal Metagenomic processing scripts for demultiplexing, QC and host removal

    biocore/mg-scripts’s past year of commit activity
    Python 1 BSD-3-Clause 5 16 8 Updated Sep 12, 2024
  • micov Public

    Aggregate genome coverage

    biocore/micov’s past year of commit activity
    Python 3 1 8 0 Updated Sep 11, 2024
  • microsetta-private-api Public

    A private microservice to support The Microsetta Initiative

    biocore/microsetta-private-api’s past year of commit activity
    Python 6 BSD-3-Clause 19 66 4 Updated Sep 9, 2024
  • metagenomics_pooling_notebook Public

    Jupyter notebooks to assist with sample processing

    biocore/metagenomics_pooling_notebook’s past year of commit activity
    Python 8 MIT 16 40 (2 issues need help) 4 Updated Aug 31, 2024
  • microsetta-admin Public
    biocore/microsetta-admin’s past year of commit activity
    Python 0 BSD-3-Clause 10 15 4 Updated Aug 20, 2024
  • biom-format Public

    The Biological Observation Matrix (BIOM) Format Project

    biocore/biom-format’s past year of commit activity
    Python 89 95 18 1 Updated Aug 4, 2024
  • empress Public

    A fast and scalable phylogenetic tree viewer for microbiome data analysis

    biocore/empress’s past year of commit activity
    JavaScript 45 BSD-3-Clause 31 140 (18 issues need help) 7 Updated Aug 4, 2024
  • q2-greengenes2 Public

    A QIIME 2 plugin for interaction with the Greengenes2 database

    biocore/q2-greengenes2’s past year of commit activity
    Python 27 BSD-3-Clause 3 6 0 Updated Jul 5, 2024
  • unifrac Public
    biocore/unifrac’s past year of commit activity
    Python 37 BSD-3-Clause 16 17 1 Updated Jun 28, 2024
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