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converting otu_table.csv format to otu_table.qza #61

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Hesham999666 opened this issue Jul 23, 2021 · 1 comment
Open

converting otu_table.csv format to otu_table.qza #61

Hesham999666 opened this issue Jul 23, 2021 · 1 comment

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@Hesham999666
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I am new to microbiome data analysis

I am trying to use DEICODE to generate distance matrix.
Is there way to convert otu_table generated by R and dada2 pipeline otu_table (as qza file formate ) to so I can use it in Qiime2/ DEICODE ?

@cameronmartino
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This is a better question for the QIIME2 forum. See here for a description on importing data: https://forum.qiime2.org/t/importing-csv-to-qza/3920

There is also a standalone which can take a biom table as input.

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