MANIFEST.in

include CONTRIBUTING.md
include COPYING.txt
include ChangeLog.md
include README.md

graft examples
graft tests
graft scripts
graft doc

prune docs/_build

global-exclude *.pyc
global-exclude *.pyo
global-exclude .git
global-exclude FastTree
global-exclude uclust
global-exclude FlowgramAli_4frame
global-exclude indexdb_rna
global-exclude sortmerna
global-exclude sumaclust
global-exclude swarm
global-exclude amplicon_contingency_table.py
global-exclude swarm_breaker.py
global-exclude *.hi
global-exclude *.o
global-exclude qiime_test_data