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Spatial Autocorrelation Scorer Implementation #402

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merged 8 commits into from
May 29, 2024

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@lenatr99 lenatr99 commented May 29, 2024

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Implements Spatial Autocorrelation Scorer for visualizations.

Description of changes

I implemented Spatial Autocorrelation Scorer that calculates the spatial autocorrelation score (Moran's I or Geary's C) for each gene in the dataset. The input dataset must include gene expression values in columns and spatial coordinates (x and y) in selected columns. The adjacency matrix is computed using k-nearest neighbors based on the spatial coordinates. The scores are computed independently for each gene.

Includes
  • Code changes
  • Tests
  • Documentation

@lenatr99 lenatr99 merged commit ca64d5d into biolab:master May 29, 2024
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