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Biomedical Informatics Group

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  1. MOGDx MOGDx Public

    R

  2. MOGDx-PPMI MOGDx-PPMI Public

    R 1

  3. cadmus cadmus Public

    A full-text article retrieval pipeline for biomedical literature.

    Python 17 2

  4. ParallelPyMetaMap ParallelPyMetaMap Public

    This code is to run MetaMap in parallel using Python.

    Python 8

  5. sfariexpression sfariexpression Public

    Code repository for SFARI Genes and where to find them; classification modelling to identify genes associated with Autism Spectrum Disorder from RNA-seq data

    R

  6. clusterCons clusterCons Public

    Merged consensus clustering to assess and improve class discovery with microarray data

    R 1

Repositories

Showing 10 of 25 repositories
  • biomedicalinformaticsgroup.github.io Public

    Biomedical Informatics Group @informatics, Edinburgh University

    biomedicalinformaticsgroup/biomedicalinformaticsgroup.github.io’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated Jun 18, 2024
  • cadmus Public

    A full-text article retrieval pipeline for biomedical literature.

    biomedicalinformaticsgroup/cadmus’s past year of commit activity
    Python 17 MIT 2 3 0 Updated May 29, 2024
  • Sargasso Public

    Sargasso disambiguates mixed-species high-throughput sequencing data.

    biomedicalinformaticsgroup/Sargasso’s past year of commit activity
    Python 8 4 11 0 Updated Feb 6, 2024
  • MOGDx-PPMI Public
    biomedicalinformaticsgroup/MOGDx-PPMI’s past year of commit activity
    R 1 0 0 1 Updated Jan 21, 2024
  • MOGDx Public
    biomedicalinformaticsgroup/MOGDx’s past year of commit activity
    R 0 0 0 0 Updated Jan 21, 2024
  • ParallelPyMetaMap Public

    This code is to run MetaMap in parallel using Python.

    biomedicalinformaticsgroup/ParallelPyMetaMap’s past year of commit activity
    Python 8 MIT 0 2 0 Updated Jul 20, 2023
  • oa_pmc_extr Public

    This repository automatically requests and extracts Full Text from Open Access PMC.

    biomedicalinformaticsgroup/oa_pmc_extr’s past year of commit activity
    Python 1 MIT 0 1 0 Updated May 30, 2023
  • pm_abs_extr Public

    This repository automatically requests and extracts abstract from PubMed.

    biomedicalinformaticsgroup/pm_abs_extr’s past year of commit activity
    Python 1 MIT 0 1 0 Updated May 28, 2023
  • bionlp_resources Public

    Repository where we can keep scripts related to other projects

    biomedicalinformaticsgroup/bionlp_resources’s past year of commit activity
    Python 1 MIT 0 0 0 Updated May 27, 2023
  • rb_vs_ode_model_of_darpp-32 Public Forked from ewysocka/rb_vs_ode_model_of_darpp-32

    Repository storing molecular rule-based models in Kappa language and Python-based figures published as the BioRxiv preprint: https://www.biorxiv.org/content/10.1101/2022.03.26.485918v1

    biomedicalinformaticsgroup/rb_vs_ode_model_of_darpp-32’s past year of commit activity
    0 1 0 0 Updated Mar 28, 2022
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