Update URLs (#6)

- Add HTTPS for downloads from OBO PURL - Switch to Bioregistry PURLs
biopragmatics · Apr 3, 2024 · d5a1694 · d5a1694
1 parent 6071940
commit d5a1694
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Showing 6 changed files with 10 additions and 10 deletions.
diff --git a/lib/docs/docs/javascript.md b/lib/docs/docs/javascript.md
@@ -39,10 +39,10 @@ async function main() {
   }`);
 
   // Load from an extended prefix map (string or URI)
-  const converterFromUrl = await Converter.fromExtendedPrefixMap("https://raw.githubusercontent.com/biopragmatics/bioregistry/main/exports/contexts/bioregistry.epm.json")
+  const converterFromUrl = await Converter.fromExtendedPrefixMap("https://w3id.org/biopragmatics/bioregistry.epm.json")
 
   // Load from a JSON-LD context (string or URI)
-  const converterFromJsonld = await Converter.fromJsond("http://purl.obolibrary.org/meta/obo_context.jsonld");
+  const converterFromJsonld = await Converter.fromJsond("https://purl.obolibrary.org/meta/obo_context.jsonld");
 
   // Load from one of the predefined source
   const converterFromSource = await getBioregistryConverter();

diff --git a/lib/docs/docs/rust.md b/lib/docs/docs/rust.md
@@ -19,10 +19,10 @@ async fn usage_example() -> Result<(), Box<dyn std::error::Error>> {
 }"#).await?;
 
     // Load from an extended prefix map (string or URI)
-    let converterFromUrl = Converter::from_extended_prefix_map("https://raw.githubusercontent.com/biopragmatics/bioregistry/main/exports/contexts/bioregistry.epm.json").await?;
+    let converterFromUrl = Converter::from_extended_prefix_map("https://w3id.org/biopragmatics/bioregistry.epm.json").await?;
 
     // Load from a JSON-LD context (string or URI)
-    let converterFromJsonld = Converter::from_jsonld("http://purl.obolibrary.org/meta/obo_context.jsonld").await?;
+    let converterFromJsonld = Converter::from_jsonld("https://purl.obolibrary.org/meta/obo_context.jsonld").await?;
 
     // Load from one of the predefined source
     let converterFromSource = get_bioregistry_converter().await?;

diff --git a/lib/src/api.rs b/lib/src/api.rs
@@ -158,7 +158,7 @@ impl Converter {
     /// use curies::{Converter, Record, error::CuriesError};
     ///
     /// fn test_from_jsonld() -> Result<(), CuriesError> {
-    ///     let converter = Converter::from_jsonld("http://purl.obolibrary.org/meta/obo_context.jsonld");
+    ///     let converter = Converter::from_jsonld("https://purl.obolibrary.org/meta/obo_context.jsonld");
     ///     Ok(())
     /// }
     /// ```
@@ -196,7 +196,7 @@ impl Converter {
     /// ```
     /// use curies::Converter;
     ///
-    /// let converter = Converter::from_extended_prefix_map("https://raw.github.com/biopragmatics/bioregistry/main/exports/contexts/bioregistry.epm.json");
+    /// let converter = Converter::from_extended_prefix_map("https://w3id.org/biopragmatics/bioregistry.epm.json");
     /// ```
     pub async fn from_extended_prefix_map<T: ExtendedPrefixMapSource>(
         prefix_map: T,

diff --git a/lib/src/sources.rs b/lib/src/sources.rs
@@ -2,7 +2,7 @@
 
 use crate::{error::CuriesError, Converter};
 
-/// Get the latest [OBO Foundry context](http://purl.obolibrary.org/meta/obo_context.jsonld).
+/// Get the latest [OBO Foundry context](https://purl.obolibrary.org/meta/obo_context.jsonld).
 ///
 /// The OBO Foundry context is a simple prefix map stored in a JSON-LD file.
 /// It contains OBO Foundry preferred prefixes and OBO PURL expansions,
@@ -127,5 +127,5 @@ pub async fn get_go_converter() -> Result<Converter, CuriesError> {
 /// assert_eq!(uri, "https://www.ncbi.nlm.nih.gov/gene/100010");
 /// ```
 pub async fn get_bioregistry_converter() -> Result<Converter, CuriesError> {
-    Converter::from_extended_prefix_map("https://raw.githubusercontent.com/biopragmatics/bioregistry/main/exports/contexts/bioregistry.epm.json").await
+    Converter::from_extended_prefix_map("https://w3id.org/biopragmatics/bioregistry.epm.json").await
 }
diff --git a/scripts/benchmark_python.py b/scripts/benchmark_python.py
@@ -1,7 +1,7 @@
 import curies
 
 # converter = curies.get_bioregistry_converter()
-url = "https://raw.githubusercontent.com/biopragmatics/bioregistry/main/exports/contexts/bioregistry.epm.json"
+url = "https://w3id.org/biopragmatics/bioregistry.epm.json"
 converter = curies.load_extended_prefix_map(url)
 
 curie = converter.compress("http://purl.obolibrary.org/obo/DOID_1234")

diff --git a/scripts/benchmark_rust.py b/scripts/benchmark_rust.py
@@ -1,7 +1,7 @@
 import time
 from curies_rs import Converter
 
-url = "https://raw.githubusercontent.com/biopragmatics/bioregistry/main/exports/contexts/bioregistry.epm.json"
+url = "https://w3id.org/biopragmatics/bioregistry.epm.json"
 converter = Converter.load_extended_prefix_map(url)
 
 start_time = time.time()