add benchmark scripts

scripts/benchmark.sh

@@ -0,0 +1,33 @@
+#!/usr/bin/env bash
+set -e
+
+# Install:
+# HYPERFINE_VERSION="1.12.0"
+# wget https://github.com/sharkdp/hyperfine/releases/download/v${HYPERFINE_VERSION}/hyperfine_${HYPERFINE_VERSION}_amd64.deb
+# sudo dpkg -i hyperfine_${HYPERFINE_VERSION}_amd64.deb
+
+source .venv/bin/activate
+
+pip install --upgrade curies
+
+maturin develop --release -m python/Cargo.toml
+maturin build --release -m python/Cargo.toml
+pip install --no-index --find-links=target/wheels/ curies-rs
+
+# m = number of run
+hyperfine -m 6 --warmup 3 --export-markdown benchmark.md \
+    'python scripts/benchmark_rust.py' \
+    'python scripts/benchmark_python.py'
+
+
+# Benchmark 1: python scripts/benchmark_rust.py
+#   Time (mean ± σ):     463.6 ms ±  24.1 ms    [User: 217.4 ms, System: 38.3 ms]
+#   Range (min … max):   438.4 ms … 499.7 ms    6 runs
+
+# Benchmark 2: python scripts/benchmark_python.py
+#   Time (mean ± σ):     11.232 s ±  1.557 s    [User: 10.847 s, System: 0.060 s]
+#   Range (min … max):   10.094 s … 14.161 s    6 runs
+
+# Summary
+#   'python scripts/benchmark_rust.py' ran
+#    24.23 ± 3.59 times faster than 'python scripts/benchmark_python.py'

scripts/benchmark_python.py

@@ -0,0 +1,9 @@
+import curies
+
+# converter = curies.get_bioregistry_converter()
+url = "https://raw.githubusercontent.com/biopragmatics/bioregistry/main/exports/contexts/bioregistry.epm.json"
+converter = curies.load_extended_prefix_map(url)
+
+curie = converter.compress("http://purl.obolibrary.org/obo/DOID_1234")
+
+print(curie)

scripts/benchmark_rust.py

@@ -0,0 +1,8 @@
+from curies_rs import Converter
+
+url = "https://raw.githubusercontent.com/biopragmatics/bioregistry/main/exports/contexts/bioregistry.epm.json"
+converter = Converter.load_extended_prefix_map(url)
+
+curie = converter.compress("http://purl.obolibrary.org/obo/DOID_1234")
+
+print(curie)